Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1959
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical p...    33   0.31 
Z48585-10|CAJ43439.1|  338|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z48585-9|CAD59166.1|  347|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U40419-6|AAL02445.2|  408|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical
           protein Y49E10.29 protein.
          Length = 559

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 138 PPKRPSSAKTRVQTKLTRPRCSQGSVKDTPKYSEPNNHQKA 260
           PPK PS +     TK  R   S GS   TPK+++P+ + KA
Sbjct: 469 PPKEPSISSEPTTTKKPRKSFSPGSA--TPKHTQPSENGKA 507


>Z48585-10|CAJ43439.1|  338|Caenorhabditis elegans Hypothetical
           protein ZK673.11b protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +3

Query: 138 PPKRPSSAKTRVQTKLTRPRCSQGSVKDTPKYSEPNNHQKAVIVQFSRVKD 290
           PP  PS +     TK+  P        D     + +N  +  I +FSRV D
Sbjct: 192 PPSLPSESPASKPTKIDIPEAILNDRDDILDREDDHNEDQVSIYEFSRVSD 242


>Z48585-9|CAD59166.1|  347|Caenorhabditis elegans Hypothetical
           protein ZK673.11a protein.
          Length = 347

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +3

Query: 138 PPKRPSSAKTRVQTKLTRPRCSQGSVKDTPKYSEPNNHQKAVIVQFSRVKD 290
           PP  PS +     TK+  P        D     + +N  +  I +FSRV D
Sbjct: 201 PPSLPSESPASKPTKIDIPEAILNDRDDILDREDDHNEDQVSIYEFSRVSD 251


>Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical
           protein B0379.3b protein.
          Length = 1050

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 111 RKTARAC*RPPKRPSSAKTRVQTKLTRPRCSQGSVKDTPKYSE-PN 245
           R T R+  RPP+ P+S   RV    T P   QG+    P+ S  PN
Sbjct: 438 RNTDRSTSRPPRAPTSPVNRVME--TDPLMGQGTSSGAPQRSAIPN 481


>Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical
           protein B0379.3a protein.
          Length = 1054

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 111 RKTARAC*RPPKRPSSAKTRVQTKLTRPRCSQGSVKDTPKYSE-PN 245
           R T R+  RPP+ P+S   RV    T P   QG+    P+ S  PN
Sbjct: 442 RNTDRSTSRPPRAPTSPVNRVME--TDPLMGQGTSSGAPQRSAIPN 485


>U40419-6|AAL02445.2|  408|Caenorhabditis elegans Hypothetical
           protein C27F2.7 protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = -2

Query: 303 TDQRDLSREKIELSQPFDDY*VQNT*AYLSRTLANISAESTLFGPSFLPKKVVLVVFSRP 124
           T+ R L RE+    + F    ++   A  SR L  I+ E+T+F   +L + + L   +R 
Sbjct: 189 TEVRLLKRERTRTDRQFISNNIRGVLAPFSRALTKITFETTVFVTDWLDEILQLHRENRL 248

Query: 123 LPFS 112
           +P S
Sbjct: 249 IPLS 252


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 72  AVTRSKRYTG-ADRRKTARAC*RPPKRPSSAKTRVQTKLTRPRCSQGSVKDTP 227
           A +RSK     A RR++  A   PP  P  AK+R ++   R R S  + K  P
Sbjct: 334 AKSRSKSPPAPARRRRSPSASKSPPPAPKRAKSRSKSPPARRRRSPSASKSPP 386


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,020,932
Number of Sequences: 27780
Number of extensions: 380532
Number of successful extensions: 791
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)