Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1959
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    27   0.15 
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   3.2  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   4.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   7.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.9  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   9.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -2

Query: 789 ITKQKLKFNPLSKLHRP---FDRRIHYLTSQNFLA 694
           +TK K++   LS LH P    +R++H+ TS +  A
Sbjct: 387 LTKSKMEVMELSDLHHPNCKINRKVHHTTSSSSAA 421


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 722 CIRRSKGRCNFESGLNLSFCF 784
           CI  +K     E+GLN   CF
Sbjct: 118 CINANKSTDKCENGLNFIICF 138


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
 Frame = -1

Query: 223 VSFTDPCEHLGRVNFV--WTL 167
           ++F  PCEH G V+ +  W L
Sbjct: 109 ITFDIPCEHRGLVSIIDGWEL 129


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 574 GSHFEGYTNMSK 609
           G H +GYTN SK
Sbjct: 205 GFHMDGYTNNSK 216


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 12/79 (15%), Positives = 30/79 (37%)
 Frame = +3

Query: 87  KRYTGADRRKTARAC*RPPKRPSSAKTRVQTKLTRPRCSQGSVKDTPKYSEPNNHQKAVI 266
           K Y   +  +  R   +   R  + + R + +      S   + +   Y+  NN+ K + 
Sbjct: 286 KSYKNENSYRKYRETSKERSRDKTERERSKERKIISSLSNNYISNISNYNNNNNYNKKLY 345

Query: 267 VQFSRVKDLSGQCCVVLFC 323
              + ++ +     V ++C
Sbjct: 346 YNINYIEQIPVPVPVPIYC 364


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -1

Query: 187 VNFVWTLVFAEEGRFG 140
           +NF ++L  + +G+FG
Sbjct: 474 INFTYSLALSPDGQFG 489


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 735 DRRIHYLTSQNFLA*RSGNQAIITLLQKK 649
           DRR    T +N  + +SG+ AI+ L+  K
Sbjct: 380 DRRNGKTTEENPKSIKSGDAAIVMLVPSK 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,520
Number of Sequences: 438
Number of extensions: 4682
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)