Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1955
         (797 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q24I49 Cluster: DHHC zinc finger domain containing prot...    35   2.7  
UniRef50_Q9W6Y6 Cluster: Olfactory receptor; n=1; Rana esculenta...    34   3.6  
UniRef50_Q7NKI8 Cluster: Gll1489 protein; n=1; Gloeobacter viola...    34   3.6  
UniRef50_Q661I8 Cluster: Putative uncharacterized protein; n=3; ...    33   8.3  

>UniRef50_Q24I49 Cluster: DHHC zinc finger domain containing
           protein; n=1; Tetrahymena thermophila SB210|Rep: DHHC
           zinc finger domain containing protein - Tetrahymena
           thermophila SB210
          Length = 336

 Score = 34.7 bits (76), Expect = 2.7
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = -1

Query: 158 YLYIQNMFSKEHYVIHILIVFFLNIDISFFSLINFCRADC 39
           +++IQ MF +E+    + +  FLN+++ FF L N+ +  C
Sbjct: 28  FIFIQQMFEQEYTAAGLFVTIFLNVNV-FFMLANYYQCIC 66


>UniRef50_Q9W6Y6 Cluster: Olfactory receptor; n=1; Rana
           esculenta|Rep: Olfactory receptor - Rana esculenta
           (Edible frog)
          Length = 213

 Score = 34.3 bits (75), Expect = 3.6
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 95  FLNIDISFFSLINFCRADCIDSFVCAI 15
           FL+I + F + +NFCR D ID F C +
Sbjct: 84  FLSIALGFVTTLNFCRDDVIDHFYCDV 110


>UniRef50_Q7NKI8 Cluster: Gll1489 protein; n=1; Gloeobacter
           violaceus|Rep: Gll1489 protein - Gloeobacter violaceus
          Length = 437

 Score = 34.3 bits (75), Expect = 3.6
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = -3

Query: 225 QYKDHSILSLPLYSPQY 175
           QY DHSILSLPLY P Y
Sbjct: 195 QYLDHSILSLPLYPPHY 211


>UniRef50_Q661I8 Cluster: Putative uncharacterized protein; n=3;
           Borrelia burgdorferi group|Rep: Putative uncharacterized
           protein - Borrelia garinii
          Length = 237

 Score = 33.1 bits (72), Expect = 8.3
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -1

Query: 494 KSLFFLEKKKRLD*DIAFAYVIKNVITFINVAY*AKCCLNQTAFHHSIYRVLSYVKGMLN 315
           KSL   +KK   D      +++KN+I F N+ +      N   F HSI  +   +K + N
Sbjct: 175 KSLLNKDKKYENDIKEELDFILKNIIEFKNIEFNKLSQENLKLFFHSILEIKKKIKYIKN 234

Query: 314 KF 309
            F
Sbjct: 235 NF 236


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 606,681,706
Number of Sequences: 1657284
Number of extensions: 9680694
Number of successful extensions: 17147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17140
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68319938570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)