Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1954
(791 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 28 1.3
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 28 1.3
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 28 1.8
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces... 27 3.1
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 4.1
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |... 27 4.1
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 26 5.4
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 26 5.4
SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual 26 5.4
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 26 7.1
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 7.1
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 26 7.1
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa... 26 7.1
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.4
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 25 9.4
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -1
Query: 734 LGVSPENRYYKLI-KKSIESNYILQHRYKIQI 642
+G + E R Y+LI +KS+E N + + +YK+ I
Sbjct: 849 IGQTKEVRIYRLITEKSVEENILARAQYKLDI 880
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 86 QKGVKLAAEEEDHGLLLPLFTEPEDS--GIDSDDTGRN-ASRNRLQEDAQSESSSTDDE 253
++ VK+ +E G L + E E S D++DT +R L ED S SSS DD+
Sbjct: 385 EQAVKIKTKEPLEGEELRSYQELEFSKRNKDAEDTALEFRNRTILDEDLSSSSSSEDDD 443
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 27.9 bits (59), Expect = 1.8
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Frame = +2
Query: 11 RIYVSLITKLSTQIQFDIVRLVP*TQKGVKLAA--EEEDHGL------LLPLFTEPEDSG 166
RI + I L +IQ+ + +L+ + ++ + E E++G L L +P S
Sbjct: 70 RIEIEKIRPLENRIQYSVDKLLRAAGRKEEIGSIKEPENNGNDKDSQDSLKLHYKPNLSE 129
Query: 167 IDSDDTGRNASRNRLQEDAQSESSSTDDE 253
D G + N ++ED +S SS D+E
Sbjct: 130 FADDSDGPASENNVVKEDDKSSISSEDEE 158
>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 279
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +3
Query: 51 YNLILFGLCPRHKKESSWRPKRKIMGCCSPCSRNPRT 161
Y+ ++ GLC K + RP+ + C P P+T
Sbjct: 98 YSTMVCGLCVSLLKNAVGRPRPDFLARCQPFESTPKT 134
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Frame = -3
Query: 594 TKYCRRIFVILASLS---LVTM*VLAGNATTARND 499
+++CR +F+ILA++ L+ + ++A N T A +D
Sbjct: 101 SRFCRDVFLILAAICCTILIPINIVATNKTLANSD 135
>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 4.1
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 14 IYVSLITKLSTQI--QFDIVRLVP*TQKGVKLAAEEEDHGLLLPLFTEPEDSGID 172
++VS+ T L + + I RLV GV L + +E L PLF E E ID
Sbjct: 130 VFVSVATNLKKKCVPEKGIARLVIEKPFGVDLKSAQELQSQLAPLFDEKEIYRID 184
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 433 PPLYEVELTASDEDEDTSVLELVIP 507
P LY++ T S + ED S ELV P
Sbjct: 7 PRLYDMSPTESKKQEDVSETELVYP 31
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 110 EEEDHGLLLPLFTEPEDSGIDSDDTGRNASRNRL--QEDAQSE 232
E+ HGL + + G+DS D+G++ R++ EDA S+
Sbjct: 1294 EDNSHGLSVEENRISKSPGLDSSDSGKSRKRSQSVDSEDAGSK 1336
>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
Length = 353
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 94 SQAGGRRGRSWAVAPLVHGTRG 159
S GGR GR W + P + GT+G
Sbjct: 123 SYHGGRNGRMWTLDP-IDGTKG 143
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 610 KIYIVSNVITMICILYRCC 666
KIY+ +V MIC LY C
Sbjct: 1495 KIYLRRHVFEMICTLYNSC 1513
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 146 TEPEDSGIDSDDTGRNASRNR-LQEDAQSESSSTDDE 253
+E SG SD++ ++S + ED S SSS+D E
Sbjct: 100 SEASGSGSSSDESDSSSSESESSSEDNDSSSSSSDSE 136
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = -2
Query: 196 CVSTCVVAVNATVLGFREQGEQQPMIFLFGRQLDSFLCLGHKPNNIKL 53
CV TC V V F+ Q E F R +D + +G+ N +
Sbjct: 340 CVDTCSQIVGTQVYEFQNQAEMLSSWSKFVRDVDPDVLIGYNICNFDI 387
>SPAC4D7.09 |tif223||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 87 CV*GTSRTISNCICVDNLVIRD 22
CV G +SN I +DN+V+ D
Sbjct: 393 CVIGKGVVVSNSILMDNIVVED 414
>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +2
Query: 92 GVKLAAEEEDHGLLLPL--FTEPEDSGIDSDDTGRNASRNRLQEDAQSESSSTDDE 253
G A +E+ H + L + + ED + + R L ED SSS++DE
Sbjct: 30 GFNSAKKEKLHRMALSMEAIEDVEDQSFNGKSSNLVRKRRGLDEDIDEFSSSSEDE 85
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 20 VSLITKLSTQIQFDIVRLVP*TQKGVKLAAEEEDHGLLLPLFTEPEDSG 166
VSL+ K T +Q ++P + + A EEE L+ +F E + G
Sbjct: 1025 VSLLDKNGTLLQLPYDTVLPYARNVARNAVEEEKTYLISDVFREAKGGG 1073
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,031,574
Number of Sequences: 5004
Number of extensions: 61244
Number of successful extensions: 230
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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