Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1954
(791 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 32 0.60
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 31 0.79
05_04_0174 - 18728199-18731411 31 1.0
04_01_0049 - 532308-532961 30 2.4
01_01_0940 + 7417035-7417124,7417989-7418051,7418632-7418736,741... 29 4.2
03_01_0312 + 2469096-2470862 29 5.6
11_06_0620 + 25585060-25585283,25585355-25585538 28 7.4
11_06_0610 - 25449085-25453284 28 7.4
03_02_0403 + 8160664-8163690 28 7.4
03_01_0430 + 3320198-3320215,3320496-3320642,3321157-3321268,332... 28 7.4
02_05_1219 + 35011571-35011897,35012008-35013780,35013915-350140... 28 7.4
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944... 28 7.4
01_05_0174 + 18919759-18920265,18920381-18920443,18921060-189217... 28 7.4
11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937 28 9.8
05_01_0187 + 1349725-1352238 28 9.8
04_04_1686 + 35362454-35362781,35362891-35363165,35363770-35363880 28 9.8
04_04_0312 + 24314940-24315143,24316074-24316253,24316801-243170... 28 9.8
>01_06_0213 + 27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 31.9 bits (69), Expect = 0.60
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 122 HGLLLPLFTEPEDSGIDSDDTGRNASRNRLQEDAQSESSSTDD 250
HG++ +E ED ++ DD G +R +D +E DD
Sbjct: 1508 HGMIDDDVSEEEDEDVEGDDDGEEDDADRAVDDVDAEMDEDDD 1550
>01_01_0908 +
7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 31.5 bits (68), Expect = 0.79
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +1
Query: 337 EDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDEDTSVLELVIPSSR 516
ED+ +D+ P VP+ H+ VN ++P L EV L +EDE+ E ++
Sbjct: 222 EDNTSVDVGALPEVPQITWHIEVNGADQPPSTPKLSEVVL-KRNEDENGKTEETLVAEQC 280
Query: 517 RVTSE 531
+T +
Sbjct: 281 NLTKD 285
>05_04_0174 - 18728199-18731411
Length = 1070
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 164 GIDSDDTGRNASRNRLQEDAQSESSSTDDE 253
G D DD GRNA R R +D + + + ++E
Sbjct: 134 GEDDDDAGRNARRRRSPDDEEEDGDAGEEE 163
>04_01_0049 - 532308-532961
Length = 217
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 137 PLFTEPEDSGIDSDDTGRNASRNRLQEDAQSESSSTD 247
P F P + G++ D TG + + + D + SSS+D
Sbjct: 174 PAFVWPPEGGVEVDSTGSDVDASLCEWDEEETSSSSD 210
>01_01_0940 +
7417035-7417124,7417989-7418051,7418632-7418736,
7419066-7419097,7419173-7419317,7419760-7419945,
7420134-7420224,7420333-7421021
Length = 466
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/78 (23%), Positives = 37/78 (47%)
Frame = +1
Query: 295 DEELAKVIPVLHCDEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDED 474
D+++ ++ CDEDD D D+M+ P+ +P E+ +R P + + T + +
Sbjct: 24 DDDIGPRAIIIDCDEDDTD-DVMEVVPLKM---LMPKEVENEQRTVPGIPQTCNTQNTSN 79
Query: 475 EDTSVLELVIPSSRRVTS 528
T+ E+ + + S
Sbjct: 80 GRTNTTEVPVKGQNKCAS 97
>03_01_0312 + 2469096-2470862
Length = 588
Score = 28.7 bits (61), Expect = 5.6
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 137 PLFTEPEDSGIDSDDTGRNASRNRLQEDAQSES 235
P F++P+D G DS + NA++N + + + ++
Sbjct: 556 PFFSKPKDKGGDSTNPSTNAAKNSWKNEQRGQN 588
>11_06_0620 + 25585060-25585283,25585355-25585538
Length = 135
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 117 KIMGCCSPCSRNPRTVALTATTQVETHRGIVCKK 218
KI GC S S + R + ATT HR +C++
Sbjct: 30 KIHGCYSSSSSSSRAPVVVATTASFLHRCFLCRR 63
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +1
Query: 370 PPVPKPDDHLPVNKES--PERASPPLYEVELTASDEDED 480
PP P P+ H P +S PE SPP+ T+ E+
Sbjct: 727 PPPPAPEGHTPSPPKSSPPEEKSPPIPPTSHTSPPTPEE 765
>03_02_0403 + 8160664-8163690
Length = 1008
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 424 RASPPLYEVELTASDEDEDTSVLELVIPSSRRVTSE 531
RA P +EVE+ +E+ED E + ++RRV E
Sbjct: 15 RARNPSFEVEVVVEEEEEDEE--EAAVAAARRVKRE 48
>03_01_0430 +
3320198-3320215,3320496-3320642,3321157-3321268,
3321389-3321504,3321557-3321671,3321791-3321915,
3322145-3322215,3322308-3322368
Length = 254
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 367 WPPVPKPDDHLPVNKESPER 426
W P +P DHLP KE E+
Sbjct: 222 WTPYNRPHDHLPARKEYVEK 241
>02_05_1219 +
35011571-35011897,35012008-35013780,35013915-35014068,
35014158-35014801
Length = 965
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = +1
Query: 457 TASD-EDEDTSVLELVIPSSRRVTSE--YLHRHQRK*SQNHEN 576
TA+D ED+ S ++ +PSSRR+ E + R + K Q+ EN
Sbjct: 391 TAADSEDDSMSAVDETVPSSRRLAKEITWQMRMRLKDKQDEEN 433
>01_05_0687 + 24288648-24292746,24293737-24293844,24294333-24294442,
24295208-24295282
Length = 1463
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +1
Query: 298 EELAKVIPVLHCDEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYE 447
EE A P L + D D+D + PP+P + K P SP + E
Sbjct: 1041 EEAAGPPPALELEAMDVDMDAIHPPPLPFDSGVESLQKPLPRAPSPIMQE 1090
>01_05_0174 +
18919759-18920265,18920381-18920443,18921060-18921761,
18922934-18923068,18923391-18923474,18924095-18924151,
18924290-18924376,18924963-18925205
Length = 625
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 334 DEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDED 480
D+DD+D PP KP P + P++ P + A+D+D+D
Sbjct: 15 DDDDDDAPAADAPPKAKPPPP-PSSSSGPKK--PKQRRLSSAAADDDDD 60
>11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937
Length = 853
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +1
Query: 316 IPVLHCDEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDEDTSVLE 495
I V H D D+ L P P P + V+ AS L E++L + E E SV++
Sbjct: 339 IGVAHTDMMDKVLHWADLKPWPPPSGNGSVHFLISAHASVELQELDLAEAREGELLSVVD 398
Query: 496 L 498
L
Sbjct: 399 L 399
>05_01_0187 + 1349725-1352238
Length = 837
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +1
Query: 316 IPVLHCDEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDEDTSVLE 495
I V H D D+ L P P P + V+ AS L E++L + E E SV++
Sbjct: 302 IGVAHTDMMDKVLHWADLKPWPPPSGNGSVHFLISAHASVELQELDLAEAREGELLSVVD 361
Query: 496 L 498
L
Sbjct: 362 L 362
>04_04_1686 + 35362454-35362781,35362891-35363165,35363770-35363880
Length = 237
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/51 (23%), Positives = 23/51 (45%)
Frame = +3
Query: 102 WRPKRKIMGCCSPCSRNPRTVALTATTQVETHRGIVCKKTHRANQAALMMK 254
+ P+ +++G CS C R + L + T + + HR N + + K
Sbjct: 18 FHPREEVVGVCSQCLRERLLLLLASKTSPAAAHLLADRPLHRKNSSISLPK 68
>04_04_0312 +
24314940-24315143,24316074-24316253,24316801-24317030,
24317205-24317375,24317685-24317790,24318099-24318305,
24318646-24318806,24319001-24319103
Length = 453
Score = 27.9 bits (59), Expect = 9.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1
Query: 343 DEDLDMMQWPPVPKPDDHL 399
D+ + ++PP+PKPD H+
Sbjct: 307 DDGMKWKEFPPMPKPDSHI 325
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,782,834
Number of Sequences: 37544
Number of extensions: 421283
Number of successful extensions: 1620
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1615
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -