Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1954
         (791 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine rece...    35   0.058
U00031-7|AAK18870.2|  422|Caenorhabditis elegans Hypothetical pr...    30   2.2  
AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z79601-6|CAB01887.1|  872|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z79596-9|CAB01859.1|  872|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AF101312-4|AAC69220.1|  358|Caenorhabditis elegans Hypothetical ...    29   5.0  
AC024832-1|AAK71408.1|  167|Caenorhabditis elegans Hypothetical ...    29   5.0  
Z81458-1|CAB03820.1|  274|Caenorhabditis elegans Hypothetical pr...    28   8.8  
Z68105-1|CAA92122.2|  195|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu...    28   8.8  
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu...    28   8.8  
AC024790-5|AAF60640.2|  119|Caenorhabditis elegans Hypothetical ...    28   8.8  
AC006712-6|AAO21405.1|  765|Caenorhabditis elegans Temporarily a...    28   8.8  
AC006712-5|AAK39326.2|  851|Caenorhabditis elegans Temporarily a...    28   8.8  

>U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine
           receptor, class x protein46 protein.
          Length = 317

 Score = 35.1 bits (77), Expect = 0.058
 Identities = 21/59 (35%), Positives = 32/59 (54%)
 Frame = +2

Query: 578 LLQYFVLCPQVKFTLFRMLLQ*FVFCIDVVECSWILSIS*LTCNNDFRG*LRA*SLSNI 754
           L+ YF++ P+V+ T  R  +  F F   +  C   +SI+   CN+DFR  LR  S+  I
Sbjct: 230 LICYFIISPRVEDTWVRFFMTTFAFS-TIHACDGAISIA---CNSDFRSYLRRCSMKKI 284


>U00031-7|AAK18870.2|  422|Caenorhabditis elegans Hypothetical
           protein B0361.7 protein.
          Length = 422

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 361 MQWPPVPKPDDHLPVNKESPERASPPLYEVELTA 462
           + W P+P      P +KE  E AS P  E+E+ A
Sbjct: 128 LMWQPIPVHTISKPTDKELYEEASCPTAEIEMNA 161


>AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical
           protein F14F9.3 protein.
          Length = 848

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 156 RTVALTATTQVETHRGIVCKKTHRANQAALMMKDHTLVEDT 278
           + V   +T ++E  R  +C++ H+  Q  LM+KD T  + T
Sbjct: 463 KMVTKGSTMEIEYIREGICEECHQTKQELLMLKDETTSKRT 503


>Z79601-6|CAB01887.1|  872|Caenorhabditis elegans Hypothetical
           protein K09A9.6 protein.
          Length = 872

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +1

Query: 337 EDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDED 480
           EDD+D D    PP P P       +++ ++ +      ++T SD+++D
Sbjct: 97  EDDDDDDDDDEPPTPSPRVSKKQEQQTTQQKTTQPAAAQVTDSDDEDD 144


>Z79596-9|CAB01859.1|  872|Caenorhabditis elegans Hypothetical
           protein K09A9.6 protein.
          Length = 872

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +1

Query: 337 EDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDED 480
           EDD+D D    PP P P       +++ ++ +      ++T SD+++D
Sbjct: 97  EDDDDDDDDDEPPTPSPRVSKKQEQQTTQQKTTQPAAAQVTDSDDEDD 144


>AF101312-4|AAC69220.1|  358|Caenorhabditis elegans Hypothetical
           protein F56E10.1 protein.
          Length = 358

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 104 AAEEEDHGLLLPLFTEPED-SGIDSDDTGRNASRNRLQEDAQSESSSTDDE 253
           +++ E+  ++L   TEPED +G + D+     S    +ED+  E S  D +
Sbjct: 23  SSDGENSVIILDSDTEPEDGAGGEEDEDNGEDSEEEDEEDSDEEESEDDSD 73


>AC024832-1|AAK71408.1|  167|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.4 protein.
          Length = 167

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -3

Query: 657 IQNTNHCNNIRNNVNFTCGHSTKYCRRIFV 568
           I++  +  N+RNN++F C HST + + +F+
Sbjct: 106 IKSRENFKNMRNNLHFFCNHST-FIKILFI 134


>Z81458-1|CAB03820.1|  274|Caenorhabditis elegans Hypothetical
           protein C03E10.1 protein.
          Length = 274

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 752 YLIEITLGVSPENRYYKLI-KKSIESNYILQHRYKI 648
           +L+EI L  S +NRYYK I +  +   Y+L   +++
Sbjct: 157 FLLEIFLYFSAKNRYYKTIGQMCLTKRYMLSESFEL 192


>Z68105-1|CAA92122.2|  195|Caenorhabditis elegans Hypothetical
           protein F13E6.1 protein.
          Length = 195

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = +1

Query: 298 EELAKVIPVLHCDEDDEDLDMMQWPPV-PK--PDDHLPVNKESPERASPPLYEVELTASD 468
           EEL K    L   + DED  +++ P V PK   +D    NK    +A   L   EL  + 
Sbjct: 13  EELEKFAKELQGSDSDEDAVVIEQPTVEPKLPQNDSSSSNKIVLSQAEKDLLRTELDKT- 71

Query: 469 EDEDTSVLELVIPSSRRVTSE 531
            +E+ S L+ V+ + ++  +E
Sbjct: 72  -EEEISTLKQVLSARQKHAAE 91


>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
            glutamine tract) toxicityenhancer protein 1, isoform a
            protein.
          Length = 1081

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = +1

Query: 319  PVLHCDEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDEDTSVLEL 498
            PV H     ++    +     + DD +PV K+     SP   E    +  EDED  +   
Sbjct: 815  PVRHPKRRSDEKREKRHVSYAESDDDMPVVKKKRRNQSPEDPEYSAASPSEDEDDDIGSF 874

Query: 499  VI 504
            V+
Sbjct: 875  VV 876


>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
            glutamine tract) toxicityenhancer protein 1, isoform b
            protein.
          Length = 1647

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = +1

Query: 319  PVLHCDEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDEDTSVLEL 498
            PV H     ++    +     + DD +PV K+     SP   E    +  EDED  +   
Sbjct: 815  PVRHPKRRSDEKREKRHVSYAESDDDMPVVKKKRRNQSPEDPEYSAASPSEDEDDDIGSF 874

Query: 499  VI 504
            V+
Sbjct: 875  VV 876


>AC024790-5|AAF60640.2|  119|Caenorhabditis elegans Hypothetical
           protein Y47D7A.2 protein.
          Length = 119

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +1

Query: 373 PVPKPDDHLPVNKESPERASPPLYEVELTASDEDEDTSVLELVIPSSRRVTSEYLHRHQR 552
           P PK     P    +P  ++PP  +   ++SD  EDT    +   +S   TSEY  R + 
Sbjct: 40  PTPKKYPVAPTYPSTPSYSAPPA-QSAYSSSDNQEDTESESVTGAAS---TSEYRKRAKA 95

Query: 553 K*SQNHE 573
           + + N +
Sbjct: 96  RTAHNRQ 102


>AC006712-6|AAO21405.1|  765|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 332, isoform b protein.
          Length = 765

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 173 SDDTGRNASRNRLQEDAQSESSSTDDE 253
           SDD   N+ + R +E ++S+SSS+ D+
Sbjct: 642 SDDETSNSRKRRKRESSESQSSSSSDD 668


>AC006712-5|AAK39326.2|  851|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 332, isoform a protein.
          Length = 851

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 173 SDDTGRNASRNRLQEDAQSESSSTDDE 253
           SDD   N+ + R +E ++S+SSS+ D+
Sbjct: 642 SDDETSNSRKRRKRESSESQSSSSSDD 668


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,156,256
Number of Sequences: 27780
Number of extensions: 366012
Number of successful extensions: 1402
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1400
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)