Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1953X
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    29   0.40 
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    26   3.7  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    25   4.9  
SPAC26A3.03c |rmi1||RecQ mediated genome instability protein Rmi...    25   4.9  
SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyce...    25   6.5  
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...    25   8.5  
SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy...    25   8.5  

>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 240 LQAFRETMKLLWTGDLKMNTVHVRDVCRAIWTLGTSP 350
           L++F E  KL+W  D KM   HV +     W L   P
Sbjct: 519 LESFVEHNKLMWLKDRKMGDGHVYESSALTWPLLLGP 555


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +1

Query: 34  SSGQMCSNDKPQKEDCSIDPWTIEGRMKSKVEQELKNMEDLNYTIKRPAIEY 189
           SS +   N    K++  +       ++  ++EQEL  ++D  +++  P +EY
Sbjct: 586 SSKKRAENSLKSKKELYLKNLNQRYQIAHELEQELSYLQDYVFSLGNPYVEY 637


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 7/29 (24%), Positives = 20/29 (68%)
 Frame = +1

Query: 67  QKEDCSIDPWTIEGRMKSKVEQELKNMED 153
           +K+DC +DP+ I+    + ++Q++  +++
Sbjct: 199 EKKDCPMDPFIIDHSKSTFIDQQVLKLQE 227


>SPAC26A3.03c |rmi1||RecQ mediated genome instability protein
           Rmi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 71  FWGLSLLHICPLEISTSLGTFIL 3
           FWGL    I  +++ST LGT +L
Sbjct: 163 FWGLERKPIKGIQLSTKLGTKLL 185


>SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 461 GTIVIMIDYEYIRDELGQCTMSAVPFDNQVIDLLVGMR 348
           GTI +    +Y+ D  G    + V  + QV+D  +  R
Sbjct: 15  GTITLQDSNDYLTDNFGMGNANRVNLNQQVLDGSISFR 52


>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 473 SRNSGTIVIMIDYEYIRDELGQCTMS-AVPFDNQVIDLLVGMRTGPES 333
           SR      + +  ++I D      ++ AVPF N+ +DL++  RT P++
Sbjct: 47  SRPGREYFVEVKEDFIEDLFNLTGLNLAVPFYNEALDLILD-RTAPDT 93


>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 166

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 112 MKSKVEQELKNMEDLNYTIKR 174
           M S+++QEL+ +   NYTI++
Sbjct: 1   MTSELQQELQILRSFNYTIEK 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,132,304
Number of Sequences: 5004
Number of extensions: 45587
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)