Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1953X
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0100 - 19056465-19056470,19057043-19057276,19058391-190585...    29   2.8  
03_01_0138 - 1089063-1089266,1089590-1089671,1089937-1090390,109...    28   4.9  
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165...    27   6.5  
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558...    27   6.5  
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438...    27   6.5  
04_04_1627 - 34867557-34870095,34870159-34870391,34871274-34871276     27   8.6  
04_04_1184 + 31558678-31558707,31559485-31559644,31559732-315603...    27   8.6  

>11_05_0100 -
           19056465-19056470,19057043-19057276,19058391-19058546,
           19059639-19059763,19059912-19059983,19060080-19060184,
           19060691-19060745,19061576-19061656,19062806-19062869,
           19064715-19064782,19064947-19065033,19066121-19066285,
           19066310-19066429,19066485-19066607,19066738-19067019,
           19067936-19068075,19068234-19068335,19068802-19068874,
           19069061-19069171
          Length = 722

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = -3

Query: 374 VIDLLVGMRTGPESPDGTTDVADMYRVHFQIASPKEFHCFPKCL 243
           V D L G R   E  DGTTD+     VHF   S  E  C+   L
Sbjct: 433 VSDKLEGFRAAKEYLDGTTDIT--RTVHFGKPSEHEKSCYTAVL 474


>03_01_0138 -
           1089063-1089266,1089590-1089671,1089937-1090390,
           1091094-1091634
          Length = 426

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 67  QKEDCSIDPWTIEGRMKSKVEQELKNME 150
           Q+E+  I  W  E   K+K+E E+K ME
Sbjct: 334 QREEVKIQAW--ENHQKAKIEAEMKRME 359


>04_04_1015 -
           30115377-30115477,30115570-30115615,30116491-30116590,
           30116676-30116771,30119519-30119556,30119623-30119733,
           30119820-30119951,30120024-30120263,30120532-30120700,
           30120994-30121493,30121581-30121691,30121802-30122133,
           30122603-30122737,30122839-30122988,30123809-30123947
          Length = 799

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 339 GTSPHANKQIYNLVVEGNSTHGTLAELISDIFIINHDYYGTAISTLAKNDVA 494
           G+S  A K++ ++ +  +      A+LISD F +  D    A S+    DVA
Sbjct: 151 GSSSGAGKKVKHIALPEDVPVERTAQLISDHFQLKEDQSSRASSSAQNEDVA 202


>04_04_1008 -
           30054674-30054774,30054867-30054912,30055788-30055887,
           30055973-30056068,30058816-30058853,30058920-30059030,
           30059117-30059248,30059321-30059560,30059829-30059997,
           30060291-30060790,30060878-30060988,30061099-30061430,
           30061900-30062034,30062136-30062285,30063106-30063244
          Length = 799

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 339 GTSPHANKQIYNLVVEGNSTHGTLAELISDIFIINHDYYGTAISTLAKNDVA 494
           G+S  A K++ ++ +  +      A+LISD F +  D    A S+    DVA
Sbjct: 151 GSSSGAGKKVKHIALPEDVPVERTAQLISDHFQLKEDQSSRASSSAQNEDVA 202


>03_02_0838 +
           11641484-11642030,11643614-11643650,11643784-11643841,
           11646176-11646265,11646796-11646913,11648093-11648277,
           11648330-11648455,11648578-11648634,11648741-11648821,
           11649068-11649102,11649265-11649354,11649443-11649599,
           11649785-11649901
          Length = 565

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -1

Query: 130 VPLCSSSDLRSSKGQLSNLPFGAYHCCTSV 41
           +PL SSS + SS G  S LP+ A  C TS+
Sbjct: 109 IPLSSSSWMWSSLGSWSLLPWMARTCSTSM 138


>04_04_1627 - 34867557-34870095,34870159-34870391,34871274-34871276
          Length = 924

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 73  EDCSIDPWTIEGRMKSKVEQELKNMEDLNYTIKRPAI 183
           E+ S++   ++   K + EQELK  + + Y+IK+  I
Sbjct: 98  EEESVENSALQAFKKERNEQELKQAQKMGYSIKQKEI 134


>04_04_1184 +
           31558678-31558707,31559485-31559644,31559732-31560394,
           31560512-31560956,31561090-31561171,31561319-31561534
          Length = 531

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 67  QKEDCSIDPWTIEGRMKSKVEQELKNMED 153
           +KE+  I+ W  E   K+K+E E+K +E+
Sbjct: 435 KKEELKIEAW--ESLQKAKIESEMKRIEE 461


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,051,185
Number of Sequences: 37544
Number of extensions: 305623
Number of successful extensions: 822
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)