Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1953X
         (505 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT004487-1|AAO42651.1|  371|Drosophila melanogaster LD23561p pro...    91   8e-19
BT001818-1|AAN71573.1|  329|Drosophila melanogaster RH40150p pro...    91   8e-19
AE014297-3413|AAN13961.1|  329|Drosophila melanogaster CG5854-PB...    91   8e-19
AE014297-3412|AAF56208.1|  371|Drosophila melanogaster CG5854-PA...    91   8e-19

>BT004487-1|AAO42651.1|  371|Drosophila melanogaster LD23561p
           protein.
          Length = 371

 Score = 91.1 bits (216), Expect = 8e-19
 Identities = 41/82 (50%), Positives = 54/82 (65%)
 Frame = +3

Query: 237 ILQAFRETMKLLWTGDLKMNTVHVRDVCRAIWTLGTSPHANKQIYNLVVEGNSTHGTLAE 416
           I +   ETMKLLW   +++NTVHV DVC A+W L  SP    QIYN+  +  ST GT++ 
Sbjct: 201 IYKYLNETMKLLWNDAMRLNTVHVSDVCAAVWQLAQSPKTAGQIYNICDDSASTQGTISN 260

Query: 417 LISDIFIINHDYYGTAISTLAK 482
           L+ DIF IN D++G  +S LAK
Sbjct: 261 LLVDIFDINLDFFGLVMSNLAK 282



 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
 Frame = +1

Query: 10  KVPRLVEISSGQMCSNDK-PQKEDCSIDPWTIEGRMKSKVEQELKNMEDLNYTIKRPAIE 186
           +V R VE+SSG + S++K P KEDC  DPWT   + K KVE+EL N++DL+YT+ R  + 
Sbjct: 124 RVKRYVELSSGCVNSSEKTPLKEDCKTDPWTGVAKQKLKVEKELANIDDLSYTVVRLPVV 183

Query: 187 YGIGDR*CLTTRLLYGGFYKHLGK 258
           YGIGD+  L  R++    YK+L +
Sbjct: 184 YGIGDKRYLMPRIIIAAIYKYLNE 207


>BT001818-1|AAN71573.1|  329|Drosophila melanogaster RH40150p
           protein.
          Length = 329

 Score = 91.1 bits (216), Expect = 8e-19
 Identities = 41/82 (50%), Positives = 54/82 (65%)
 Frame = +3

Query: 237 ILQAFRETMKLLWTGDLKMNTVHVRDVCRAIWTLGTSPHANKQIYNLVVEGNSTHGTLAE 416
           I +   ETMKLLW   +++NTVHV DVC A+W L  SP    QIYN+  +  ST GT++ 
Sbjct: 159 IYKYLNETMKLLWNDAMRLNTVHVSDVCAAVWQLAQSPKTAGQIYNICDDSASTQGTISN 218

Query: 417 LISDIFIINHDYYGTAISTLAK 482
           L+ DIF IN D++G  +S LAK
Sbjct: 219 LLVDIFDINLDFFGLVMSNLAK 240



 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
 Frame = +1

Query: 10  KVPRLVEISSGQMCSNDK-PQKEDCSIDPWTIEGRMKSKVEQELKNMEDLNYTIKRPAIE 186
           +V R VE+SSG + S++K P KEDC  DPWT   + K KVE+EL N++DL+YT+ R  + 
Sbjct: 82  RVKRYVELSSGCVNSSEKTPLKEDCKTDPWTGVAKQKLKVEKELANIDDLSYTVVRLPVV 141

Query: 187 YGIGDR*CLTTRLLYGGFYKHLGK 258
           YGIGD+  L  R++    YK+L +
Sbjct: 142 YGIGDKRYLMPRIIIAAIYKYLNE 165


>AE014297-3413|AAN13961.1|  329|Drosophila melanogaster CG5854-PB,
           isoform B protein.
          Length = 329

 Score = 91.1 bits (216), Expect = 8e-19
 Identities = 41/82 (50%), Positives = 54/82 (65%)
 Frame = +3

Query: 237 ILQAFRETMKLLWTGDLKMNTVHVRDVCRAIWTLGTSPHANKQIYNLVVEGNSTHGTLAE 416
           I +   ETMKLLW   +++NTVHV DVC A+W L  SP    QIYN+  +  ST GT++ 
Sbjct: 159 IYKYLNETMKLLWNDAMRLNTVHVSDVCAAVWQLAQSPKTAGQIYNICDDSASTQGTISN 218

Query: 417 LISDIFIINHDYYGTAISTLAK 482
           L+ DIF IN D++G  +S LAK
Sbjct: 219 LLVDIFDINLDFFGLVMSNLAK 240



 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
 Frame = +1

Query: 10  KVPRLVEISSGQMCSNDK-PQKEDCSIDPWTIEGRMKSKVEQELKNMEDLNYTIKRPAIE 186
           +V R VE+SSG + S++K P KEDC  DPWT   + K KVE+EL N++DL+YT+ R  + 
Sbjct: 82  RVKRYVELSSGCVNSSEKTPLKEDCKTDPWTGVAKQKLKVEKELANIDDLSYTVVRLPVV 141

Query: 187 YGIGDR*CLTTRLLYGGFYKHLGK 258
           YGIGD+  L  R++    YK+L +
Sbjct: 142 YGIGDKRYLMPRIIIAAIYKYLNE 165


>AE014297-3412|AAF56208.1|  371|Drosophila melanogaster CG5854-PA,
           isoform A protein.
          Length = 371

 Score = 91.1 bits (216), Expect = 8e-19
 Identities = 41/82 (50%), Positives = 54/82 (65%)
 Frame = +3

Query: 237 ILQAFRETMKLLWTGDLKMNTVHVRDVCRAIWTLGTSPHANKQIYNLVVEGNSTHGTLAE 416
           I +   ETMKLLW   +++NTVHV DVC A+W L  SP    QIYN+  +  ST GT++ 
Sbjct: 201 IYKYLNETMKLLWNDAMRLNTVHVSDVCAAVWQLAQSPKTAGQIYNICDDSASTQGTISN 260

Query: 417 LISDIFIINHDYYGTAISTLAK 482
           L+ DIF IN D++G  +S LAK
Sbjct: 261 LLVDIFDINLDFFGLVMSNLAK 282



 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
 Frame = +1

Query: 10  KVPRLVEISSGQMCSNDK-PQKEDCSIDPWTIEGRMKSKVEQELKNMEDLNYTIKRPAIE 186
           +V R VE+SSG + S++K P KEDC  DPWT   + K KVE+EL N++DL+YT+ R  + 
Sbjct: 124 RVKRYVELSSGCVNSSEKTPLKEDCKTDPWTGVAKQKLKVEKELANIDDLSYTVVRLPVV 183

Query: 187 YGIGDR*CLTTRLLYGGFYKHLGK 258
           YGIGD+  L  R++    YK+L +
Sbjct: 184 YGIGDKRYLMPRIIIAAIYKYLNE 207


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,208,494
Number of Sequences: 53049
Number of extensions: 512441
Number of successful extensions: 1609
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1609
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1804766976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)