Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1953X
(505 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64844-2|AAO25987.1| 846|Caenorhabditis elegans Hypothetical pr... 29 1.4
U64844-1|AAK72092.1| 882|Caenorhabditis elegans Hypothetical pr... 29 1.4
AC006769-9|AAF60585.2| 779|Caenorhabditis elegans Hypothetical ... 28 3.3
AC006645-2|AAF39844.2| 796|Caenorhabditis elegans Hypothetical ... 28 3.3
AF022985-5|AAB69974.1| 299|Caenorhabditis elegans Hypothetical ... 28 4.4
Z48334-3|CAA88310.1| 471|Caenorhabditis elegans Hypothetical pr... 27 5.8
AF016449-17|AAG24005.1| 306|Caenorhabditis elegans Hypothetical... 27 5.8
AC024809-3|AAF59541.3| 455|Caenorhabditis elegans Hypothetical ... 27 5.8
AC006830-1|AAK68610.3| 802|Caenorhabditis elegans Hypothetical ... 27 5.8
Z81553-7|CAB04496.4| 797|Caenorhabditis elegans Hypothetical pr... 27 7.7
U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated p... 27 7.7
U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated p... 27 7.7
U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated p... 27 7.7
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas... 27 7.7
AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine nucle... 27 7.7
AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucle... 27 7.7
>U64844-2|AAO25987.1| 846|Caenorhabditis elegans Hypothetical
protein T22F3.3b protein.
Length = 846
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 389 PFDNQVIDLLVGMRTGPESPDGTTDVADMYRVHFQIASPKEFHCF 255
P Q+I+ + G PE PD D+++M R H + +F F
Sbjct: 738 PMLKQIIEQIEGGMFTPEDPDQLKDLSNMLRYHDRFMVCADFDAF 782
>U64844-1|AAK72092.1| 882|Caenorhabditis elegans Hypothetical
protein T22F3.3a protein.
Length = 882
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 389 PFDNQVIDLLVGMRTGPESPDGTTDVADMYRVHFQIASPKEFHCF 255
P Q+I+ + G PE PD D+++M R H + +F F
Sbjct: 774 PMLKQIIEQIEGGMFTPEDPDQLKDLSNMLRYHDRFMVCADFDAF 818
>AC006769-9|AAF60585.2| 779|Caenorhabditis elegans Hypothetical
protein Y45G12C.11 protein.
Length = 779
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 200 TDDV*QPVSSTVDFTSI*-GNNETPLDWRSENEH 298
TDDV + ++S VD+ + + +TPLDW EN H
Sbjct: 72 TDDV-KRLASFVDWNLVVVADTKTPLDWNLENVH 104
>AC006645-2|AAF39844.2| 796|Caenorhabditis elegans Hypothetical
protein F56A4.6 protein.
Length = 796
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 200 TDDV*QPVSSTVDFTSI*-GNNETPLDWRSENEH 298
TDDV + ++S VD+ + + +TPLDW EN H
Sbjct: 72 TDDV-KVLASFVDWNLVVVADTKTPLDWNLENVH 104
>AF022985-5|AAB69974.1| 299|Caenorhabditis elegans Hypothetical
protein T15B7.8 protein.
Length = 299
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +2
Query: 194 SVTDDV*QPVSSTVDFTSI*-GNNETPLDWRSENEH 298
S T+D+ + ++S VD+ + + +TPLDW+ EN H
Sbjct: 140 SPTEDI-KRLASFVDWNLVVVADTKTPLDWKLENVH 174
>Z48334-3|CAA88310.1| 471|Caenorhabditis elegans Hypothetical
protein F10B5.3 protein.
Length = 471
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 240 LQAFRETMKLLWTGDLKMNTVHVRDV 317
L AF+ ++ L+TGD+KM +V +V
Sbjct: 90 LAAFKVILEALYTGDIKMKSVAANEV 115
>AF016449-17|AAG24005.1| 306|Caenorhabditis elegans Hypothetical
protein C50H11.17 protein.
Length = 306
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 46 MCSNDKPQKEDCSIDPWTIEGRMKSKV--EQELKNMEDLNYTI 168
+C N+ +ED + P I+GR + +ELKN E + Y +
Sbjct: 235 LCLNEVKPREDANSFPCFIDGRFHNPQLNTEELKNKECMQYVM 277
>AC024809-3|AAF59541.3| 455|Caenorhabditis elegans Hypothetical
protein Y53G8AR.8 protein.
Length = 455
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = -2
Query: 393 CSLR--QPSYRSACWHEDWSRESRWHDRRRGHV 301
C+ R + S +S W WSR RW + + HV
Sbjct: 6 CTARSFRTSVKSNGWVHKWSRFKRWQEMQAAHV 38
>AC006830-1|AAK68610.3| 802|Caenorhabditis elegans Hypothetical
protein ZK105.3 protein.
Length = 802
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 185 STESVTDDV*QPVSSTVDFTSI*-GNNETPLDWRSENEH 298
S + T+DV + +SS D+ + + +TPLDW+ EN H
Sbjct: 55 SVSAPTEDV-KRLSSFPDWNLVVVADTKTPLDWKLENVH 92
>Z81553-7|CAB04496.4| 797|Caenorhabditis elegans Hypothetical
protein F56H6.7 protein.
Length = 797
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 254 GNNETPLDWRSENEH 298
G+ +TPLDW+ EN H
Sbjct: 90 GDTKTPLDWQLENVH 104
>U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated
protein 73, isoform b protein.
Length = 1638
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 312 DVCRAIWTLGTSPHANKQIYNLVVEGNSTHG 404
DV A L S HA I+N+ VEG T G
Sbjct: 198 DVTTANAALKKSQHAKNSIFNVPVEGIETEG 228
>U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated
protein 73, isoform f protein.
Length = 2140
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 312 DVCRAIWTLGTSPHANKQIYNLVVEGNSTHG 404
DV A L S HA I+N+ VEG T G
Sbjct: 198 DVTTANAALKKSQHAKNSIFNVPVEGIETEG 228
>U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated
protein 73, isoform a protein.
Length = 2488
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 312 DVCRAIWTLGTSPHANKQIYNLVVEGNSTHG 404
DV A L S HA I+N+ VEG T G
Sbjct: 198 DVTTANAALKKSQHAKNSIFNVPVEGIETEG 228
>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 1 protein.
Length = 2500
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 333 TLGTSPHANKQIYNLVVEGNSTHGTLAELI 422
T G SP +IYN + GN T TL E++
Sbjct: 218 TWGVSPEG-AEIYNQIARGNFTTQTLIEIV 246
>AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine
nucleotide exchange factorUNC-73B protein.
Length = 1638
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 312 DVCRAIWTLGTSPHANKQIYNLVVEGNSTHG 404
DV A L S HA I+N+ VEG T G
Sbjct: 198 DVTTANAALKKSQHAKNSIFNVPVEGIETEG 228
>AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine
nucleotide exchange factorUNC-73A protein.
Length = 2488
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 312 DVCRAIWTLGTSPHANKQIYNLVVEGNSTHG 404
DV A L S HA I+N+ VEG T G
Sbjct: 198 DVTTANAALKKSQHAKNSIFNVPVEGIETEG 228
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,888,679
Number of Sequences: 27780
Number of extensions: 262241
Number of successful extensions: 706
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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