Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1953X
         (505 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   2.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   5.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.3  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   7.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   9.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.6  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +3

Query: 348 PHANKQIYNLVVEGNSTHGTLAELISDIFIINHDYYGTAISTLAKNDVASV 500
           P   + IY+ V   N THG   +    IF    DY   AIS    N + +V
Sbjct: 214 PSDLRTIYSRVRNLNRTHGFPNDAQPYIFQEVIDYGNEAISKREYNGIGAV 264


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = -3

Query: 470 RNSGTIVIMIDYEYIRDELGQCTMSAVPFDNQVIDLLVGMRTGP 339
           R + T+  M+D  Y   +   CT+    +   V+D+++  +  P
Sbjct: 154 RFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVLDVVMYWKETP 197


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -1

Query: 304 CTVFIFRSPVQRSFI 260
           CT+F+F + V+ +F+
Sbjct: 301 CTIFLFAAMVEFAFV 315


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 59  SLLHICPLEI 30
           SLLHIC LE+
Sbjct: 112 SLLHICMLEL 121


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 99  DRRSDEEQSGTRAEKHGGPELHHQ 170
           DR SDE +  + ++K G    H Q
Sbjct: 269 DRPSDEAEPSSTSKKSGIVRSHQQ 292


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 332 PDGTTDVADMYRVHFQIASPKEFHC 258
           PD     + ++RV   I+S  E+ C
Sbjct: 94  PDSKVTYSGLWRVCVAISSRMEYEC 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,062
Number of Sequences: 438
Number of extensions: 3028
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)