Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1951
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.8  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    26   6.8  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    25   9.0  
SPAC823.10c |||mitochondrial carrier with solute carrier repeats...    25   9.0  
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    25   9.0  

>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 205 KECDFPTINSIYNVNALFIPLHT 273
           +EC +PT  ++Y  N  F+   T
Sbjct: 13  RECSYPTFRTLYEFNKFFLRYKT 35


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 265 LHTLSTDARSEC*AVSLLRMRTHGPASPEH 354
           +H L+TD R +  A SLL+  +H    P H
Sbjct: 380 IHALATDVRFQTVAFSLLQDLSHYGLRPNH 409


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 44  KLLKQTMIMYYTNWNVSLSYVRSRQKAGEVTACITKYRQRR 166
           ++ +Q M+ YY  +  SLS + S +   E T  I K R+++
Sbjct: 355 QVFRQAMVNYYRLYEDSLSELLSGEIITEATLKIVKDRRKK 395


>SPAC823.10c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 569 DGRQCNTLRSSNSQQRTWSVFTWS 640
           DG     LR S S   TWSV+ W+
Sbjct: 266 DGFFLRVLRKSISSTITWSVYEWA 289


>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 49  FEANNDNVLYKLERKFV 99
           F+  NDNVLY+   KFV
Sbjct: 235 FDCVNDNVLYRASSKFV 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,272,875
Number of Sequences: 5004
Number of extensions: 70564
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)