Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1951
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0043 + 570340-571683                                             30   2.3  
03_02_0632 - 9973296-9973513,9973657-9973750                           30   2.3  
10_01_0045 + 611166-612308                                             29   3.1  
01_06_1241 + 35675596-35675918,35676459-35676804,35676864-35676866     28   7.1  
04_04_1422 + 33453498-33453519,33453617-33454887                       28   9.4  

>10_01_0043 + 570340-571683
          Length = 447

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -1

Query: 536 AAAWLCP*HSDVHERR*PLTIRWAVCSSAYKGNKKKYDRKCSPMHLLIVNINAYA 372
           A  W C   + +     P  + +AV +  Y G K  Y   CS MH+ +    A A
Sbjct: 264 AVLWQCRTRAVMKNPEAPAVLLFAVNARKYLGAKDGYYGNCSTMHVAVAKSGAVA 318


>03_02_0632 - 9973296-9973513,9973657-9973750
          Length = 103

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 641 YSR*RPTKFSVANWKTSKCCIVGHQERYTSVGC 543
           Y R +PT F    W+T +C IV     Y  V C
Sbjct: 29  YEREQPTSFYSLWWRTMECFIVQQSSSYQRVKC 61


>10_01_0045 + 611166-612308
          Length = 380

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -1

Query: 536 AAAWLCP*HSDVHERR*PLTIRWAVCSSAYKGNKKKYDRKCSPMHLLIVNINAYA 372
           A  W C   + +     P  + +AV +  Y G K  Y   CS MH+ +    A A
Sbjct: 202 AVLWQCRTRAVMTNPEAPAVLLFAVNARKYLGAKDGYYGNCSTMHVAVAKSGAVA 256


>01_06_1241 + 35675596-35675918,35676459-35676804,35676864-35676866
          Length = 223

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +2

Query: 482 VVTDAHGRQNARGRAKPLPTNNLHWYIAPDGRQCNTLRSSNSQQRTWSVFTW 637
           +V D    Q   GR KP+ +   H+Y+ PD  +    R S ++     + TW
Sbjct: 151 IVEDGAHEQGGDGR-KPVQSRAGHYYLPPDPAEVCVFRVSGAKFLKLHIGTW 201


>04_04_1422 + 33453498-33453519,33453617-33454887
          Length = 430

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 23/85 (27%), Positives = 36/85 (42%)
 Frame = +2

Query: 404 ASVNISCRIFFYCLCRQMSIRPTLW*VVTDAHGRQNARGRAKPLPTNNLHWYIAPDGRQC 583
           A   + C++  +C+  Q S RP +  VV    G       A   P N  H Y+   G   
Sbjct: 340 AKAEMMCKVALWCVQFQPSARPKMSSVVRMLEGEM-----AIVPPVNPFH-YVMSGGSGS 393

Query: 584 NTLRSSNSQQRTWSVFTWSTLILKS 658
           +TL SS++   +    T S+ +  S
Sbjct: 394 STLTSSSTNLSSGGTTTGSSEVAVS 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,106,128
Number of Sequences: 37544
Number of extensions: 445766
Number of successful extensions: 754
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)