Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1951
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46795-2|CAB54311.1|  932|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z46795-1|CAA86788.1|  924|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>Z46795-2|CAB54311.1|  932|Caenorhabditis elegans Hypothetical
           protein T19E10.1b protein.
          Length = 932

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 506 QNARGRAKPLPTNNLHWYIAPDGRQCNTLRSSNSQQRTWSVFTWSTL 646
           +N  G+  P PT   H    PD  +  TL  S++Q      + W +L
Sbjct: 234 ENTGGKLAPSPTLATHVVYNPDNDEVETLAVSSNQVHVTKEWFWVSL 280


>Z46795-1|CAA86788.1|  924|Caenorhabditis elegans Hypothetical
           protein T19E10.1a protein.
          Length = 924

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 506 QNARGRAKPLPTNNLHWYIAPDGRQCNTLRSSNSQQRTWSVFTWSTL 646
           +N  G+  P PT   H    PD  +  TL  S++Q      + W +L
Sbjct: 234 ENTGGKLAPSPTLATHVVYNPDNDEVETLAVSSNQVHVTKEWFWVSL 280


>Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical
           protein C54D10.7 protein.
          Length = 1144

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 25  QYSTVTKTFEANNDNVLYKLERKFVLRQK 111
           QY TV KTF  + +N L KLE K  + +K
Sbjct: 638 QYCTVFKTFLTDMNNFLNKLESKRSVHEK 666


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,256,460
Number of Sequences: 27780
Number of extensions: 399073
Number of successful extensions: 790
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)