Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1950
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    79   6e-16
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    34   0.023
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    31   0.12 
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    29   0.66 
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    28   1.5  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    28   1.5  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    27   2.0  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    27   2.0  
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    27   3.5  
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    27   3.5  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    26   6.2  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    26   6.2  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   8.2  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    25   8.2  

>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 79.0 bits (186), Expect = 6e-16
 Identities = 33/80 (41%), Positives = 47/80 (58%)
 Frame = +3

Query: 255 ESQGTCYCGKDRNLNIAELLCASCNRWFHESCIGYQLGKLVPFMTNYLFICKNCSPTGLE 434
           E    CYCGKDRNL   +L C+ C   FH SC+      ++ F TNY F+CK+C+  G E
Sbjct: 38  EQNTYCYCGKDRNLRFPDLQCSVCLNMFHLSCLSPPCTSMMGFSTNYQFVCKHCTEDGFE 97

Query: 435 TFKKNQAPFPQMCLTAIANL 494
            F++  + +  +  TA+ANL
Sbjct: 98  RFERGVSAWKAITATAMANL 117



 Score = 34.3 bits (75), Expect = 0.018
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 518 SNRRLFSKDREIIPYIDQYWEAMTTMPRRVTQSWYATVQRALI 646
           +N   F K  ++IP+I+++W+ +    R   Q+W AT+   L+
Sbjct: 144 ANTYFFKKKEDLIPFIEEHWQLLCP-DREKVQTWQATLGSCLV 185


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 33.9 bits (74), Expect = 0.023
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = +3

Query: 270  CYCGKDRNLNIAELLCASCNRWFHESCIGYQLGKLVPFMTNYLFICKNCSPTGLETFKKN 449
            C C +   ++   + C +C  WFH  C+G     +V  ++NY   C +C     + +  N
Sbjct: 1457 CLCRQPFAISDGTVQCHNCLEWFHYECVGLS-SDIVSTLSNY--ACPDCCSKEGKLYPWN 1513

Query: 450  QAP 458
              P
Sbjct: 1514 TRP 1516


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 255  ESQGTCYCGKDRNLNIAELLCASCNRWFHESCIG 356
            E   +C CG++ +   + + C  C R FH  C+G
Sbjct: 1350 EKNSSCLCGEEFSPRDSFIDCTICERRFHYDCVG 1383



 Score = 30.3 bits (65), Expect = 0.29
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +3

Query: 273 YCGKDRNLNIAELLCASCNRWFHESCIGYQLGKLVPFMTNYLFICK 410
           YCG D+N     LLC  C   +H SC+   L   +P    Y   CK
Sbjct: 273 YCGLDKNPETI-LLCDGCEAAYHTSCLDPPLTS-IPKEDWYCDACK 316


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 270 CYCGKDRNLNIAELLCASCNRWFHESCIG 356
           C C    ++    + C  C+ W H SC+G
Sbjct: 23  CVCKSQEDIGDTWVQCDGCDCWQHASCVG 51


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 303 AELLCASCNRWFHESCIGYQLGKLVPFMTNYLFICKNC 416
           A + C +CN   H++C G      +PF+    + CK C
Sbjct: 210 AIVFCDNCNTSVHQNCYG------IPFVPEGQWFCKKC 241


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
 Frame = +3

Query: 315 CASCNRWFHESCI-GYQLGKLVPFMTNY-LFICKNCS 419
           C  C  WFHE C+     G  +P    +   +C  CS
Sbjct: 141 CILCEDWFHEKCLQKTNKGIAIPDAETFEWLVCSECS 177


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 270 CYCGKDRNLNIAELLCASCNRWFHESCIGYQLGKLVPFMTNYLFICKNC 416
           C CG D   +     C  C+ W H +C G++     P   N L +C  C
Sbjct: 337 CECG-DSTEDSEMFQCERCDGWVHCACYGFE-SDSDPRQPNQL-LCYTC 382


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +3

Query: 315 CASCNRWFHESCIGYQLGKLVPFMTNYLFICKNCSPTGLETFKKNQ 452
           C  C+ W H +C+G+     VP     ++ C+ C P   + +++ +
Sbjct: 71  CDQCSVWQHGNCVGFADESEVP----EVYYCEICHPEFHKVYQRGR 112


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 255 ESQGTCYCGKDRNLNIAELLCASCNR-WFHESCIGYQLGKLVPFMTNYLFICKN 413
           +++  C+C +     +     A+C R WFH  C+G    K  P  T Y   C++
Sbjct: 226 DNEKYCFCQQGSYGQMVACDNANCEREWFHMECVGL---KAPPEGTWYCEACRD 276


>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -3

Query: 679 FFICEQNLDILD*SSLYCSIPRLGHPSGHCGHSFPILVNVWYDLSV 542
           F +C+ N+   D ++ +C  P    P    GH +  +V+ W+ L V
Sbjct: 372 FGLCKLNMAKTDRTNTFCGTPEYLAPELLLGHGYTKVVD-WWTLGV 416


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 315 CASCNRWFHESCIGYQLGKLVPFMTNYLFICKNCS 419
           CA C +++H  C+   L K  P    + + C  CS
Sbjct: 277 CADCKKYYHMDCVVPPLLKKPPH--GFGWTCATCS 309


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +2

Query: 533 FSKDRE----IIPYIDQYWEAMTTMPRRVTQSWYATVQRALIKDIQVLFTYEE 679
           FS DR+    I  Y D+Y+  +  MP RV Q   + +    + +++ + ++ +
Sbjct: 669 FSSDRKASGAIFEYKDKYYFVVKGMPERVLQQSTSVITNGSLDEVEDMHSHAD 721


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = +3

Query: 315 CASCNRWFHESCIGYQLGKLVPFMTNYLFICKNCSPTGLETFKKNQ 452
           C SC  W H  C+       VP      + C+ C P  ++  K ++
Sbjct: 20  CESCEVWQHAVCVNIDANN-VP----EKYFCEQCQPRPIDADKAHK 60


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 357 YQLGKLVPFMTNYLFICKNCSPTGL 431
           + L ++   M + L I ++C+PTGL
Sbjct: 334 FMLNQIRKMMAHVLMIIRSCAPTGL 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,400
Number of Sequences: 5004
Number of extensions: 55971
Number of successful extensions: 162
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)