Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1950
(717 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0623 + 4638952-4639024,4640422-4640439,4641312-4641660,464... 33 0.17
04_03_0205 + 12649724-12650191,12651493-12652025,12652114-126522... 33 0.17
03_06_0322 + 33114988-33115130,33116972-33117024,33117432-331177... 33 0.30
11_01_0800 - 7047425-7048253,7048340-7048927,7049050-7049268,704... 32 0.40
03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238 32 0.52
09_03_0178 + 13127669-13127741,13127831-13128173,13128308-131283... 31 0.91
11_01_0299 - 2241760-2241990,2242958-2243331,2243427-2243754 31 1.2
07_01_0891 - 7447079-7447330,7447431-7447554,7449571-7449793,744... 31 1.2
06_03_0304 + 19315546-19315656,19315780-19315938,19316045-193161... 31 1.2
06_03_0002 - 15280292-15281550,15282714-15282840 31 1.2
03_06_0465 - 34130083-34130340,34130421-34130541,34131158-341311... 30 2.1
07_03_1219 + 24960043-24960133,24960304-24960336,24962258-249624... 29 2.8
06_03_1507 - 30646168-30646254,30646350-30646490,30648109-306482... 29 2.8
05_04_0339 + 20397591-20397627,20398494-20398526,20399210-203994... 29 2.8
08_02_0704 + 20197529-20197601,20197720-20198062,20198194-201982... 29 3.7
06_02_0289 + 13825103-13825510,13825651-13826112,13826189-138270... 29 3.7
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502... 29 4.9
01_05_0593 + 23494515-23494706,23495819-23495936,23496302-234963... 29 4.9
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 28 6.4
01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-19... 28 8.5
>07_01_0623 +
4638952-4639024,4640422-4640439,4641312-4641660,
4643917-4643985,4645587-4645722,4646835-4646870
Length = 226
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 270 CYCGKDRNLNIAELLCASCNRWFHESCIGYQLGKLVPFMTNYLFICKNCS 419
C C N + + C C+ WFH SCIG + K + + F C++C+
Sbjct: 149 CKCEMPYNPDDLMIQCEECSDWFHPSCIGMTI-KDAKKLEH--FFCQSCT 195
>04_03_0205 +
12649724-12650191,12651493-12652025,12652114-12652239,
12652625-12652724,12652880-12652899,12653035-12653137,
12653213-12653351,12653448-12653662,12653772-12654320
Length = 750
Score = 33.5 bits (73), Expect = 0.17
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = +3
Query: 252 CESQGTCYCGKDRNLNIAELLCASCNRWFHESCIGYQLGKLVPFMTNYLFICKNCSPTGL 431
C S G C K + +L C++C +H C L + P ++C +CS
Sbjct: 12 CSSDGVCMLCKVLTTEVEQLRCSTCATPWHTPC----LSSIPPLTDVAHWVCPDCSGDVT 67
Query: 432 ETFKKNQAPFPQMCL-TAIANLQQDSV 509
++ + P+ L AI ++ D V
Sbjct: 68 ASYPPSDVVRPESSLIAAIRVIEADPV 94
>03_06_0322 +
33114988-33115130,33116972-33117024,33117432-33117780,
33118450-33118518,33119015-33119150,33120048-33120080
Length = 260
Score = 32.7 bits (71), Expect = 0.30
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +3
Query: 270 CYCGKDRNLNIAELLCASCNRWFHESCIGYQLGKLVPFMTNYLFICKNC-SPTGLETFKK 446
C C N + + C C+ WFH SC+ + + F CK+C + G + K
Sbjct: 184 CKCEMPYNPDNLMIQCEDCSDWFHPSCVEITIKEAKKLEH---FYCKSCIAENGKDLQKS 240
Query: 447 NQA 455
N A
Sbjct: 241 NGA 243
>11_01_0800 -
7047425-7048253,7048340-7048927,7049050-7049268,
7049398-7049518,7050593-7050983
Length = 715
Score = 32.3 bits (70), Expect = 0.40
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +3
Query: 270 CYCGKDRNLNIAELLCASCNRWFHESCIGYQLGKLVPFMTNYLFICKNCSPT 425
C CG + L C +C+ W H C G VP ++CK+C T
Sbjct: 628 CSCGATDDDGERMLSCDTCHMWMHTRCAGISDFDRVP----KRYVCKSCKLT 675
>03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238
Length = 697
Score = 31.9 bits (69), Expect = 0.52
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 270 CYCGKDRNLNIAELLCASCNRWFHESCIGYQLGKLVPFMTNYLFICKNC 416
C CG + + C +C+ W H C+G + VP LF+C C
Sbjct: 641 CVCGAQDDDGERMIACDACDVWHHTRCVGIADSEPVP----PLFLCVLC 685
>09_03_0178 +
13127669-13127741,13127831-13128173,13128308-13128376,
13129706-13129844,13130010-13130021
Length = 211
Score = 31.1 bits (67), Expect = 0.91
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +3
Query: 270 CYCGKDRNLNIAELLCASCNRWFHESCIGYQLGKLVPFMTNYLFICKNC 416
C C N + + C C WFH SC+G + + F+C +C
Sbjct: 141 CKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEQAKKLDH---FLCADC 186
>11_01_0299 - 2241760-2241990,2242958-2243331,2243427-2243754
Length = 310
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 267 TCY-CGKDRNLNIAELLCASCNRWFHESCIGYQLGKLVPFMTNYLFICK 410
TC+ C K ++ + C SC WFH + + G++ ++ C+
Sbjct: 88 TCFLCFKPYRSDLMYIRCESCRNWFHGDALELEEGRIAQLISYRCCRCR 136
>07_01_0891 -
7447079-7447330,7447431-7447554,7449571-7449793,
7449891-7449923,7450042-7450144
Length = 244
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 276 CGKDRNLNIAELLCASCNRWFHESCIGYQLGKLVPFMTNYL--FICKNCS 419
CG N N + C C RWFH C+ ++ P ++ + C +CS
Sbjct: 193 CGGRYNANEFWIGCDICERWFHGKCV-----RITPAKAEHIKHYKCPDCS 237
>06_03_0304 +
19315546-19315656,19315780-19315938,19316045-19316105,
19316620-19316690,19318323-19318622,19319160-19319798,
19320772-19320831
Length = 466
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Frame = +3
Query: 246 NFCESQGTC---YCGKDRNLNIAELLCASCNRWFHESCIGYQLGKLVPFMTN----YL-F 401
NF S TC Y + + + C C WFHE IG + +P Y F
Sbjct: 189 NFKGSYCTCGRPYPDPEAEKQVEMIQCCICEDWFHEDHIGLNSIEEIPRDEEGEPLYEDF 248
Query: 402 ICKNCSP 422
IC CSP
Sbjct: 249 ICPKCSP 255
>06_03_0002 - 15280292-15281550,15282714-15282840
Length = 461
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = +3
Query: 258 SQGTC-YCGKDRNL--NIAELLCASCNRWFHESCI-GYQLGKLVPFMTNYLFICKNCSPT 425
S C YC NL + + C CNR H CI G L+ + FIC +C PT
Sbjct: 173 SAAVCSYCLSLDNLPPEDSSVTCRCCNRCVHPYCIAGEHRAALIQPIDVENFICVDCCPT 232
>03_06_0465 -
34130083-34130340,34130421-34130541,34131158-34131186,
34132259-34132382,34132594-34132816,34132948-34132980,
34133106-34133208
Length = 296
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 276 CGKDRNLNIAELLCASCNRWFHESCIGYQLGKLVPFMTNYL--FICKNCS 419
CG N N + C C RWFH C+ ++ P ++ + C +CS
Sbjct: 243 CGGLYNANEFWIGCDICERWFHGKCV-----RITPAKAEHIKHYKCPDCS 287
>07_03_1219 +
24960043-24960133,24960304-24960336,24962258-24962486,
24963183-24963309,24963530-24963869,24964806-24965095
Length = 369
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 276 CGKDRNLNIAELLCASCNRWFHESCIGYQLGKLVPFMTNYL--FICKNCS 419
CG+ + + C C +WFH C+ K+ P ++ + C +CS
Sbjct: 215 CGESYGADEFWICCDICEKWFHGKCV-----KITPAKAEHIKQYKCPSCS 259
>06_03_1507 -
30646168-30646254,30646350-30646490,30648109-30648202,
30648445-30648509,30648934-30649176,30649442-30649499,
30649957-30650037,30650323-30650533,30650975-30651141,
30651216-30651268,30651600-30651681,30651765-30651914,
30652027-30652111,30652189-30652393,30652502-30652573,
30652911-30653456
Length = 779
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 309 LLCASCNRWFHESCIGY 359
LLC SC R FH C+G+
Sbjct: 442 LLCDSCPRAFHRECVGF 458
>05_04_0339 +
20397591-20397627,20398494-20398526,20399210-20399438,
20402055-20402184,20402251-20402532
Length = 236
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +3
Query: 276 CGKDRNLNIAELLCASCNRWFHESCIGYQLGKLVPFMTNYL--FICKNC 416
CG + + + C SC RW+H C+ K+ P ++ + C +C
Sbjct: 186 CGTNDGKDEFWICCDSCERWYHGKCV-----KITPARAEHIKHYKCPDC 229
>08_02_0704 +
20197529-20197601,20197720-20198062,20198194-20198262,
20199341-20199479,20199727-20199786
Length = 227
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/49 (26%), Positives = 20/49 (40%)
Frame = +3
Query: 270 CYCGKDRNLNIAELLCASCNRWFHESCIGYQLGKLVPFMTNYLFICKNC 416
C C N + + C C WFH SC+ + + F+C +C
Sbjct: 141 CKCEMPYNPDDLMVQCDDCKDWFHPSCMSMTIEQAKKLDH---FVCSDC 186
>06_02_0289 +
13825103-13825510,13825651-13826112,13826189-13827021,
13827104-13827274,13828025-13828076
Length = 641
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 288 RNLNIAELLCASCNRWFHESCIGYQLGKLVPFMTN 392
R L+ L C S W C+G Q+G L P M N
Sbjct: 556 RKLDTGLLKCYSLLCWIKSHCLGNQVGFLDPSMVN 590
>07_03_1575 -
27848977-27849095,27849254-27849302,27850270-27850287,
27850798-27851786,27852119-27852733,27852893-27852921,
27853990-27854453,27854530-27854654,27854743-27855025,
27855112-27856102,27856965-27857576,27857666-27858630
Length = 1752
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +3
Query: 270 CY-CGKDRNLNIAELLCASCNRWFHESCIG 356
CY CG D NL L C C FH C+G
Sbjct: 446 CYLCGMDGNL----LCCDGCPAAFHSKCVG 471
>01_05_0593 +
23494515-23494706,23495819-23495936,23496302-23496384,
23496468-23496524,23497004-23497112,23497230-23497282,
23497644-23497724,23497815-23497931
Length = 269
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 532 VQQRPRDHTIH*PVLGSYDHNAQKGDPVVVCYSTESSNQGYPGFVHI 672
+Q RPR H + +G H+ + V + T N P FV+I
Sbjct: 52 LQSRPRIHLLRRQQVGRSTHSLNPREAVALAAETSCENVDLPDFVNI 98
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/49 (30%), Positives = 18/49 (36%)
Frame = +3
Query: 270 CYCGKDRNLNIAELLCASCNRWFHESCIGYQLGKLVPFMTNYLFICKNC 416
C CG + + C CN W H C Y G + F C NC
Sbjct: 251 CSCGITYDDGEEMVSCDECNVWVHTRCARYVRG------VHISFSCHNC 293
>01_01_0025 +
188915-189132,190625-190705,191350-191506,191958-192161,
192248-192356,192401-192496,192724-193994,194200-194384,
194619-195055,197034-197077,197830-199036,199253-199479
Length = 1411
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 393 NLS*KVPACQVDNRYRIRETIYCMMHIITQLCSDYDLYRSSM 268
N+ K P + RI+E I C+ +Q CS Y+ + M
Sbjct: 379 NMLSKTPGASCNLYDRIKELIECVQQNASQYCSTYEFFHLIM 420
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,189,012
Number of Sequences: 37544
Number of extensions: 320708
Number of successful extensions: 666
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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