Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1950
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.9  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   3.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   3.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.8  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   8.8  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 223 YYHRFYEIQKNNNY*N 176
           Y+H+FY+ Q + NY N
Sbjct: 190 YFHQFYKQQPDLNYRN 205


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 229 YPYYHRFYEIQKNNNY*NKYR 167
           Y  Y+  Y    NNNY N Y+
Sbjct: 94  YNNYNNNYNNNYNNNYNNNYK 114


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 229 YPYYHRFYEIQKNNNY*NKYR 167
           Y  Y+  Y    NNNY N Y+
Sbjct: 94  YNNYNNNYNNNYNNNYNNNYK 114


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/31 (22%), Positives = 16/31 (51%)
 Frame = +3

Query: 465 QMCLTAIANLQQDSVKMVAIDVCSAKTERSY 557
           ++C   + NL  ++ ++  +  C A  E +Y
Sbjct: 543 KLCQQCVGNLASNNDRIRQVTKCKATNEETY 573


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/31 (22%), Positives = 16/31 (51%)
 Frame = +3

Query: 465 QMCLTAIANLQQDSVKMVAIDVCSAKTERSY 557
           ++C   + NL  ++ ++  +  C A  E +Y
Sbjct: 543 KLCQQCVGNLASNNDRIRQVTKCKATNEETY 573


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/31 (22%), Positives = 16/31 (51%)
 Frame = +3

Query: 465 QMCLTAIANLQQDSVKMVAIDVCSAKTERSY 557
           ++C   + NL  ++ ++  +  C A  E +Y
Sbjct: 543 KLCQQCVGNLASNNDRIRQVTKCKATNEETY 573


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 648 LIRALCTVAYHDWVTLLGIVVIASQYW 568
           L+ A   V Y  WV  + + +I   YW
Sbjct: 211 LLSASYLVCYGIWVYFVPLFLIIYSYW 237


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 648 LIRALCTVAYHDWVTLLGIVVIASQYW 568
           L+ A   V Y  WV  + + +I   YW
Sbjct: 87  LLSASYLVCYGIWVYFVPLFLIIYSYW 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,887
Number of Sequences: 438
Number of extensions: 4296
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)