Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1949X
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit L3...    26   2.4  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   2.4  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    25   3.2  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    24   9.7  

>SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 103

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 121 SILSRVPQSQIQHVITRKRLICNRVSRNKTLN 216
           SIL  VP+ +  +   R RL+  +  ++KT+N
Sbjct: 44  SILLAVPKKKTSYTKKRSRLLSGKALKDKTVN 75


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = -1

Query: 145 IEVLEIEWIGALKIQSQFHTHTHRLQAQKIQFFFVGIRGNR---PNLQVCS 2
           IEVLE  W   +  + +    T  + + KIQ FF     +    PN Q C+
Sbjct: 31  IEVLEDGWCDGICSEKRGWFPTSCIDSSKIQNFFSSFHSSNEKDPNAQCCA 81


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 80  CVCVKLRLDFQSSDPFYLEYLNRKYNML*R--ENDSFVIECH 199
           C  +K ++ F ++D FY +YL   +  L +        +ECH
Sbjct: 25  CSILKYKVYFVTTDTFYCKYLTASFTGLKKFPTERQLPLECH 66


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -3

Query: 140 GTRDRMDRSF-ENPISISHTHTQASSTENTIFFCGN 36
           G  + + R + ENPI    THT  S      FF G+
Sbjct: 124 GVEEALQRQYPENPIFSLITHTPVSQRSVDEFFFGD 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,181,226
Number of Sequences: 5004
Number of extensions: 19542
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)