Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1949X
         (394 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    23   5.3  
EF989011-1|ABS17666.1|  399|Anopheles gambiae serpin 7 protein.        22   7.0  
AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein p...    22   9.2  

>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 97  QFHTHTHRLQAQKIQF 50
           Q H H H+LQ Q+ +F
Sbjct: 216 QLHRHQHQLQPQQRRF 231


>EF989011-1|ABS17666.1|  399|Anopheles gambiae serpin 7 protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 152 ICD*GTRDRMDRSFENPISISHTHTQA 72
           + D GTR+ + R+F  P ++S     A
Sbjct: 81  VTDSGTREAVQRAFYLPSAVSDARANA 107


>AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein
           protein.
          Length = 353

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +3

Query: 114 APIHSISSTSIANTTCYNAKTT 179
           +P+ SISS+S  +++C N+ ++
Sbjct: 39  SPLSSISSSSRNSSSCNNSSSS 60


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 294,024
Number of Sequences: 2352
Number of extensions: 5124
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 30784536
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)