Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1949X
         (394 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58728-4|AAX55696.1|  158|Caenorhabditis elegans Synthetic letha...    27   3.6  
AY223545-1|AAO73070.1|  158|Caenorhabditis elegans SYM-3B protein.     27   3.6  

>U58728-4|AAX55696.1|  158|Caenorhabditis elegans Synthetic lethal
           with mec protein3, isoform b protein.
          Length = 158

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 83  VCVKLRLDFQSSDPFYLEYLN 145
           VC+K+ +  QS+DPF+  Y++
Sbjct: 137 VCIKVAMTHQSADPFFRVYVH 157


>AY223545-1|AAO73070.1|  158|Caenorhabditis elegans SYM-3B protein.
          Length = 158

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 83  VCVKLRLDFQSSDPFYLEYLN 145
           VC+K+ +  QS+DPF+  Y++
Sbjct: 137 VCIKVAMTHQSADPFFRVYVH 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,527,187
Number of Sequences: 27780
Number of extensions: 109992
Number of successful extensions: 304
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)