Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1948
         (771 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    23   2.7  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    23   2.7  
AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    22   4.7  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    22   4.7  
AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    22   4.7  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    22   6.2  

>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +1

Query: 466 FWYLYEFLYGWLVSAWDELKAWPTRPPRE*K----ANVPVYGNRRNARALYA 609
           +WYL    +G ++ +W      PT P +  K     +VP   +  N+  LYA
Sbjct: 276 WWYLPFAQFGPVIDSWATQPVLPTHPYQMIKNQQVYDVPWIVSFTNSEGLYA 327


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +1

Query: 466 FWYLYEFLYGWLVSAWDELKAWPTRPPRE*K----ANVPVYGNRRNARALYA 609
           +WYL    +G ++ +W      PT P +  K     +VP   +  N+  LYA
Sbjct: 276 WWYLPFAQFGPVIDSWATQPVLPTHPYQMIKNQQVYDVPWIVSFTNSEGLYA 327


>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 466 FWYLYEFLYGWLVSAWDELKAWPTRP 543
           +WYL    +G ++ +W      PT P
Sbjct: 276 WWYLPFAQFGPVIDSWATQPVLPTHP 301


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 466 FWYLYEFLYGWLVSAWDELKAWPTRP 543
           +WYL    +G ++ +W      PT P
Sbjct: 276 WWYLPFAQFGPVIDSWATQPVLPTHP 301


>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 466 FWYLYEFLYGWLVSAWDELKAWPTRP 543
           +WYL    +G ++ +W      PT P
Sbjct: 276 WWYLPFAQFGPVIDSWATQPVLPTHP 301


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 244 PRQARDKLVLLLDEFATLQEEAESVDAITSGSMGTGD 354
           PR     L L  +  +  Q+ + SVDA T G    GD
Sbjct: 2   PRARLVTLWLAFNLASIAQDPSASVDAATGGGSVLGD 38


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,798
Number of Sequences: 336
Number of extensions: 3460
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)