Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1948
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    29   0.97 
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    28   1.7  
SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.1  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   9.1  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    25   9.1  

>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 463 IFWYLYEFLYGWLVSAWDELKAWPTRPPRE*KANVPVY 576
           + W + + L+  L+  W+  + + + PPRE K ++P Y
Sbjct: 574 VSWRINQRLFNVLIRIWNSGEKFLSIPPREVKCDMPPY 611


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 159 LRRREKLSRLF*RDAFVRSPCCCKC 233
           ++RRE++S+L  +D F +S  C KC
Sbjct: 381 VQRREEISKLLDKDLFNQSHYCLKC 405


>SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 321 VHALRLFLQSSEFIEQEHQLIPRLARLCPHTCSNTA 214
           +H+L L LQ+   I++   ++  +ARL P +  +TA
Sbjct: 4   MHSLNLMLQNPSGIDKIAAILVNVARLDPASSKSTA 39


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 6/26 (23%), Positives = 16/26 (61%)
 Frame = +1

Query: 451 EYHYIFWYLYEFLYGWLVSAWDELKA 528
           E++Y+   +Y +   W+   WD++++
Sbjct: 456 EFYYLLSSIYTYNVSWISDFWDDIES 481


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
 Frame = +3

Query: 309 GERGRDNEWQHGYWRLSVLQ---HLGS 380
           G  G D E  HGYW     Q   H GS
Sbjct: 92  GSYGSDGEAYHGYWNTDFTQLNEHFGS 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,885,128
Number of Sequences: 5004
Number of extensions: 55780
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)