Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1948
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0093 - 12422558-12422607,12422679-12422935,12423565-124239...    32   0.58 
03_06_0097 - 31632238-31632525,31633386-31633769                       30   2.4  
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850           28   7.2  
01_07_0108 - 41126074-41127342                                         28   9.5  
01_05_0635 - 23847255-23847287,23847397-23848083,23848178-238485...    28   9.5  

>01_03_0093 -
           12422558-12422607,12422679-12422935,12423565-12423932,
           12423939-12424800,12425247-12425464
          Length = 584

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +3

Query: 522 EGLANETTKRIEGKRAGVRKQKKRTRPLREGGT 620
           E +  +   RIEGKRA V+K  K T PL++ G+
Sbjct: 43  EAILVQAQARIEGKRATVKKATKTTFPLKKRGS 75


>03_06_0097 - 31632238-31632525,31633386-31633769
          Length = 223

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 516 RAEGLANETTKRIEGKRAGVRKQKKR 593
           R EGL    T+ +E K+AG++K +KR
Sbjct: 192 RGEGLLTRDTRIVERKKAGLKKARKR 217


>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
          Length = 1173

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 250 QARDKLVLLLDEFATLQEEAESVDAITSGSMGTGDCPCFST 372
           +A  K   L D F+TL++EAE ++    G + + + P F T
Sbjct: 446 KAEVKFGTLEDYFSTLRDEAERINYTRPGELVSSELPGFPT 486


>01_07_0108 - 41126074-41127342
          Length = 422

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +1

Query: 487 LYGWLVSAWDELKAWPTR--PP 546
           +YG  V AWDE+  WP +  PP
Sbjct: 289 VYGPFVKAWDEILQWPKKVAPP 310


>01_05_0635 -
           23847255-23847287,23847397-23848083,23848178-23848540,
           23848633-23848725,23848820-23848870,23849031-23849304,
           23849766-23850595
          Length = 776

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 245 GCVRTLAATRRTDERISSKK-SRQLLAPAECLASLVY*LKPVD*RNS 108
           G  R LA  +RT   I     +R LLA + C+ +LV   K +  RNS
Sbjct: 443 GSERALATDQRTQRSIEGANINRSLLALSSCINALVEGKKHIPYRNS 489


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,671,911
Number of Sequences: 37544
Number of extensions: 424670
Number of successful extensions: 1151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)