Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1948
         (771 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022982-5|AAB69936.2|  799|Caenorhabditis elegans Hypothetical ...    34   0.13 
AC006693-7|AAF60385.1|  201|Caenorhabditis elegans Hypothetical ...    30   2.1  
Z92828-1|CAB07337.1|  512|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U70853-2|AAM97995.1|  228|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U29377-10|AAA68717.1|  140|Caenorhabditis elegans Hypothetical p...    29   4.8  
U51999-8|AAA96090.2|  465|Caenorhabditis elegans Glutamate recep...    28   6.4  
AF318611-1|AAK01099.1|  436|Caenorhabditis elegans ionotropic gl...    28   6.4  
Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>AF022982-5|AAB69936.2|  799|Caenorhabditis elegans Hypothetical
            protein T23B12.4 protein.
          Length = 799

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 38/192 (19%), Positives = 79/192 (41%), Gaps = 22/192 (11%)
 Frame = +1

Query: 256  RDKLVLLLDEFATLQE-----EAESVDAITSGSMGTGDCPCFS-----TWVLYHVLRVMI 405
            RD+L + +++   +       E  + + + SG M T     +S     T+V +++L ++ 
Sbjct: 507  RDRLEMAIEDLGQIHSYAGRLEERTDEVLLSGKMVTAKEQNYSYHSVATFVFHNLLAIIN 566

Query: 406  AXXXXXXXXXXXXVHEYHYIFWYLYEFLYGWLVSAWD-----ELKAWPTRPPRE*KANVP 570
                          +E+ YI+W++      W+ +  +     +L  +   P RE K N  
Sbjct: 567  HYFELGFRMDLYVPYEFPYIYWFIGSVQAHWMRTTLERSQEIQLNVYQANPLRETK-NKK 625

Query: 571  VY------GNRRNARALYAREGLMCQVMQNMCG-GYYKALVAFKLQGKIRQPQSEFDNEA 729
            ++      G     R    +  ++ Q+  +M   G  +  V    +G I+ P+   D E 
Sbjct: 626  LWEERCKLGEELKRRVAAHQFSVLNQIAISMISDGVVRLTVVLIRKGIIKMPKGGDDAEK 685

Query: 730  VRYKHRFAPLSA 765
            +R++ RF P  +
Sbjct: 686  LRFERRFEPFDS 697


>AC006693-7|AAF60385.1|  201|Caenorhabditis elegans Hypothetical
           protein W02H5.2 protein.
          Length = 201

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -1

Query: 288 EFIEQEHQLIPRLAR--LCPHTCSNTANGRTHLVK 190
           +FI Q+  + P L R  + PHTC+   N   H+VK
Sbjct: 105 DFITQDKPVKPSLIRQKIAPHTCAINKNELAHIVK 139


>Z92828-1|CAB07337.1|  512|Caenorhabditis elegans Hypothetical
           protein C37A5.1 protein.
          Length = 512

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +3

Query: 306 GGERGRDNEWQHGYWRLSVLQHL---GSVPRA 392
           GG+ GR N W    W  ++LQ L   G++P A
Sbjct: 173 GGDNGRTNYWMPVNWSSAILQKLFEDGNIPAA 204


>U70853-2|AAM97995.1|  228|Caenorhabditis elegans Hypothetical
           protein M01H9.5 protein.
          Length = 228

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 83  IEILRDSIKNFVNPPVLINKPMMPGTPQ 166
           I  LRD ++N  +PP  +++P+   TP+
Sbjct: 107 IRTLRDIVRNSAHPPTSLHRPLHKETPE 134


>U29377-10|AAA68717.1|  140|Caenorhabditis elegans Hypothetical
           protein K05F1.10 protein.
          Length = 140

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 336 ATRYRVHALRLFLQSSEFIEQEHQLIPRLARLCPHTCSN 220
           ATR R+H +R   ++ E  + EH LI    R C  TC N
Sbjct: 37  ATRTRIH-VRSERKAEECQKHEHHLICGPERHCDRTCEN 74


>U51999-8|AAA96090.2|  465|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 7 protein.
          Length = 465

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 655 YYKALVAFKLQGKIRQPQSEFDNEAVRYKHRFAPL 759
           Y   L AF    ++ QP S  D+ A +YK  +AP+
Sbjct: 226 YTANLAAFLTVSRLEQPISSLDDLAKQYKIEYAPI 260


>AF318611-1|AAK01099.1|  436|Caenorhabditis elegans ionotropic
           glutamate receptor GLR-7 protein.
          Length = 436

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 655 YYKALVAFKLQGKIRQPQSEFDNEAVRYKHRFAPL 759
           Y   L AF    ++ QP S  D+ A +YK  +AP+
Sbjct: 210 YTANLAAFLTVSRLEQPISSLDDLAKQYKIEYAPI 244


>Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical
           protein R09A8.1 protein.
          Length = 1095

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/29 (41%), Positives = 22/29 (75%)
 Frame = +3

Query: 507 GLGRAEGLANETTKRIEGKRAGVRKQKKR 593
           GLG++EG+ NETT + +G+   +RK+ ++
Sbjct: 24  GLGQSEGIWNETTTKKDGR---IRKKNRQ 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,537,388
Number of Sequences: 27780
Number of extensions: 341171
Number of successful extensions: 1023
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)