Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1948
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    27   0.15 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.78 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   1.0  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   7.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.6  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 558 LLFSWWSRWPGLQLVPGR 505
           ++ SW+S W GL  +PGR
Sbjct: 214 VMLSWFSFWLGLDAIPGR 231


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +2

Query: 110  NFVNPPVLINKPMMPGTPQAREVV--ETFLTRCVR 208
            NF NPP  +  P M G P    ++  + F T  +R
Sbjct: 1162 NFWNPPPFMPSPFMAGAPNVPTILPEQYFATSRIR 1196


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = +2

Query: 83  IEILRDSIKNFVNPPVLINKPMMPGTPQAREV--VETFLTRCVRPFAVLLQ 229
           I IL   +     P + +N    P TP  REV  +E  +  CV    V+ Q
Sbjct: 179 ISILAIKVYYISCPEISVNFAHFPATPTGREVALIEQTIGTCVANAVVIEQ 229


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/23 (34%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +1

Query: 466 FWYLYEFL-YGWLVSAWDELKAW 531
           F Y+ + L YG +V +W++ ++W
Sbjct: 206 FAYMSDELGYGLIVYSWEQNRSW 228


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -1

Query: 294 SSEFIEQEHQLIPRLARLCPHTCSNTANGRTH 199
           S+E +  +   + R    C  T  + +NG+TH
Sbjct: 347 STETLNTKCNTLERTPSKCSQTSVHYSNGQTH 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,199
Number of Sequences: 438
Number of extensions: 4067
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)