Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1943
(800 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate |Schizosacc... 78 1e-15
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 31 0.14
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 31 0.19
SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyce... 30 0.44
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 28 1.3
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos... 28 1.3
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 28 1.8
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 3.1
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 27 3.1
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po... 26 5.4
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 26 7.2
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch... 25 9.5
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 25 9.5
>SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 211
Score = 78.2 bits (184), Expect = 1e-15
Identities = 35/59 (59%), Positives = 44/59 (74%)
Frame = +3
Query: 78 IVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDIAHTSVLKRAQ 254
+V+ RHGESEWN+ NLF GW D LS+ G +EA G+ LK+ GY+FDIA TS L+RAQ
Sbjct: 10 LVLTRHGESEWNKLNLFTGWKDPALSETGIKEAKLGGERLKSRGYKFDIAFTSALQRAQ 68
Score = 74.5 bits (175), Expect = 2e-14
Identities = 33/64 (51%), Positives = 46/64 (71%)
Frame = +2
Query: 242 KTCPVTLNSILKEIGQPDIPVEKTWRLNERHYGGLTGLNKAETAAKYGEAQVQIWRRSFD 421
KTC + IL+E+G+P++ K+ +LNER+YG L GLNK + K+G QVQIWRRS+D
Sbjct: 69 KTCQI----ILEEVGEPNLETIKSEKLNERYYGDLQGLNKDDARKKWGAEQVQIWRRSYD 124
Query: 422 VPPP 433
+ PP
Sbjct: 125 IAPP 128
Score = 67.7 bits (158), Expect = 2e-12
Identities = 33/70 (47%), Positives = 46/70 (65%)
Frame = +1
Query: 514 PMYESLKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVKHLDDLSDAAIMELNL 693
P ESLK T ER LPY+ + IVP I +G+K++IAAHGNSLR ++ L+ L+ I++ L
Sbjct: 128 PNGESLKDTAERVLPYYKSTIVPHILKGEKVLIAAHGNSLRALIMDLEGLTGDQIVKREL 187
Query: 694 PTASPSYMNL 723
T P +L
Sbjct: 188 ATGVPIVYHL 197
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 31.5 bits (68), Expect = 0.14
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +3
Query: 30 SRYEIYLSNKMPAKYKIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEA 176
SR YLSN + I + RHGES++N + G D+ LS +G + A
Sbjct: 193 SRIVYYLSNLRTRRRSIWLSRHGESQFNVEGKIGG--DSSLSPQGLKYA 239
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 31.1 bits (67), Expect = 0.19
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 546 KNPALLEQCYCASDQRRQEDH-YCCPW 623
K+PA++EQC + Q DH YC PW
Sbjct: 133 KDPAVIEQCILSGVPPDQMDHVYCDPW 159
>SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 282
Score = 29.9 bits (64), Expect = 0.44
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 51 SNKMPAKYKIVMIRHGESEWNQKNLFCG-WFDADLSDKGRQEAVAAGKALK 200
S++ +K+ +++RH ESE N + + G D++L+ G +A K+++
Sbjct: 47 SSQNDSKFTCLLVRHAESEHNVRGIRAGARIDSELTVHGYNQAKKLAKSIR 97
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 529 LKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVKHLDDLSDAAIME 684
++L + +TLP+ N I+ +E K +I + GN I + D +D E
Sbjct: 1 MQLKLTKTLPFSENFIMADSEEYKTVIGISFGNQNSSIAFNRDGKTDVLANE 52
>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 209
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 242 KTCPVTLNSILKEIGQPDIPVEKTWRLNERHYGGLTGLNKAE 367
K C T+ L+ +P++P+ T + ER YG L G+N E
Sbjct: 56 KRCRETIAPYLEL--KPEVPIVYTDLIRERVYGDLEGMNVVE 95
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 523 ESLKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVKH 651
E L R L +W+ +VP + K +I+ HG + + H
Sbjct: 110 EGLSHLTSRLLKFWDEYVVPLQGKKKCVIVLCHGGVINVLRTH 152
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 18 SVICSRYEIYLSNKMPAKYKIVMIRHGESEWNQKNLFCGWFDADLSDKGRQE 173
S +CS YE+++ P+ IV H +E+ FC + A S+ G +E
Sbjct: 26 SPLCSEYELFIKELWPS---IVESFHNSTEFETAIRFCCYETARKSEIGLEE 74
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -2
Query: 445 FFHGRW-RNVEAAAPDLNLS--LPVFGSCLSLVQSSEATIMPLV 323
FF G W N A +N+ + VFGSCLS V SS I+P +
Sbjct: 349 FFQGLWFGNHLATTKRVNVGQVVTVFGSCLS-VASSLQQILPAI 391
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -2
Query: 436 GRWRNVEAAAPDLN-LSLPVFGSCLSLVQSSE 344
G W+N+ + PD+N LSL + + +S V S++
Sbjct: 308 GIWKNISVSIPDINSLSLKDYSAVVSRVISTD 339
>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 596
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 618 GSNNDLLAFFDLRHNNIVPVRQGSFN 541
GSN DL + H ++VPV Q S +
Sbjct: 184 GSNKDLKPLVLMGHQDVVPVNQASLD 209
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 33 RYEIYLSNKMPAKYKIVMIRHGESEWNQKNLFCG 134
R+ Y +N + AKY ++ E NQKN+ G
Sbjct: 40 RFLNYDNNALEAKYNEIITEEVSQEPNQKNVIVG 73
>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = +1
Query: 658 DLSDAAIMELNLPTASPSYM 717
D+ DA + E+N+P++SP+Y+
Sbjct: 321 DIQDA-VKEINIPSSSPAYI 339
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 83 YDSSWRIRMEPEESLL 130
+D SW++R E ESLL
Sbjct: 15 FDKSWKVRFEAYESLL 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,220,428
Number of Sequences: 5004
Number of extensions: 65132
Number of successful extensions: 198
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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