Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1942
(798 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0769 + 31616644-31616875,31616980-31617203,31617308-316174... 71 1e-12
06_01_0841 - 6379999-6380040,6380641-6380760,6380863-6380964,638... 64 2e-10
11_01_0229 - 1771701-1774164,1774694-1774847,1774980-1775055,177... 46 3e-05
12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,172... 45 8e-05
12_01_0228 - 1726856-1727049,1727280-1727355,1727454-1727585,172... 41 0.001
11_01_0231 - 1791754-1791947,1792178-1792253,1792352-1792483,179... 40 0.002
11_01_0309 + 2312786-2313211,2313311-2313527,2313613-2313731,231... 36 0.037
01_01_0965 - 7589659-7589785,7590188-7590317,7590339-7590438,759... 33 0.26
04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680 31 0.80
06_01_0329 + 2383305-2384057,2385423-2385469,2386383-2386815,238... 29 4.3
06_01_0172 + 1362101-1363708 29 5.7
02_05_1136 + 34369994-34370312,34370398-34370550,34370648-343707... 29 5.7
11_02_0078 - 8074247-8074837,8075815-8076341,8076453-8077022,807... 28 7.5
04_04_0207 + 23602065-23604315,23604611-23605116 28 9.9
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 28 9.9
>02_05_0769 +
31616644-31616875,31616980-31617203,31617308-31617426,
31617528-31617684,31617928-31618029,31618111-31618230,
31618761-31618855,31619900-31619984,31620090-31620180,
31620534-31620618,31620702-31620806,31621019-31621894,
31622016-31622124,31622266-31622414,31622518-31622737
Length = 922
Score = 70.5 bits (165), Expect = 1e-12
Identities = 30/53 (56%), Positives = 38/53 (71%)
Frame = +2
Query: 275 KEIGQPDIPVEKTWRLNERHYGGLTGLNKAETAAKYGEAQVQIWRRSFDVPPP 433
+E + IPV W+LNER YG L GLNK ETA ++G+ QV WRRS+D+PPP
Sbjct: 173 EETKKQSIPVITAWQLNERMYGELQGLNKQETADRFGKEQVHEWRRSYDIPPP 225
Score = 67.7 bits (158), Expect = 1e-11
Identities = 31/65 (47%), Positives = 43/65 (66%)
Frame = +1
Query: 514 PMYESLKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVKHLDDLSDAAIMELNL 693
P ESL++ ER + Y+ + IVPQ+ GK ++IAAHGNSLR I+ HLD L+ ++ L L
Sbjct: 225 PNGESLEMCAERAVAYFKDQIVPQLVAGKHVMIAAHGNSLRSIIMHLDKLTSQEVISLEL 284
Query: 694 PTASP 708
T P
Sbjct: 285 STGIP 289
Score = 60.1 bits (139), Expect = 2e-09
Identities = 30/67 (44%), Positives = 42/67 (62%)
Frame = +3
Query: 57 KMPAKYKIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDIAHTS 236
K ++ +++IRHGES WN+KNLF G D L+ KG EA+ AGK + D+ +TS
Sbjct: 75 KKSSESALILIRHGESLWNEKNLFTGCVDVPLTPKGVDEAIEAGKRIC--NIPVDVIYTS 132
Query: 237 VLKRAQL 257
L RAQ+
Sbjct: 133 SLIRAQM 139
>06_01_0841 -
6379999-6380040,6380641-6380760,6380863-6380964,
6381146-6381302,6381480-6381511
Length = 150
Score = 63.7 bits (148), Expect = 2e-10
Identities = 29/65 (44%), Positives = 41/65 (63%)
Frame = +1
Query: 514 PMYESLKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVKHLDDLSDAAIMELNL 693
P ESL++ ER + Y+ +VPQ+ GK ++IAAHGNSLR I+ LD L+ ++ L L
Sbjct: 44 PNGESLEMCAERAVAYFKEHVVPQLTAGKHVMIAAHGNSLRSIIMQLDKLTSQEVISLEL 103
Query: 694 PTASP 708
T P
Sbjct: 104 STGIP 108
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = +2
Query: 326 ERHYGGLTGLNKAETAAKYGEAQVQIWRRSFDVPPP 433
E YG L GLNK ETA ++G QV WRRS+D+PPP
Sbjct: 9 EVRYGELQGLNKQETADRFGNEQVHKWRRSYDIPPP 44
>11_01_0229 -
1771701-1774164,1774694-1774847,1774980-1775055,
1775439-1775477,1778516-1778674,1778741-1778851,
1779014-1779064,1779173-1779256
Length = 1045
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/59 (37%), Positives = 36/59 (61%)
Frame = +3
Query: 75 KIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDIAHTSVLKRA 251
++V++RHGE+ WN + G D +L++ G+Q+AV + L E I ++S LKRA
Sbjct: 10 ELVVVRHGETSWNASRIVQGQMDPELNEIGKQQAVVVARRLAREARPAAI-YSSDLKRA 67
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 523 ESLKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVKHLD 657
ESL ER + Y N V I G+++I+ HG ++ + +H D
Sbjct: 152 ESLNQLSERCISYLNKVAQNHI--GERVIVVGHGAAILELCRHTD 194
>12_01_0227 -
1718726-1721183,1721804-1721957,1722090-1722165,
1722327-1722485,1722552-1722662,1722791-1722841,
1722948-1723192,1723745-1725278
Length = 1595
Score = 44.8 bits (101), Expect = 8e-05
Identities = 21/59 (35%), Positives = 36/59 (61%)
Frame = +3
Query: 75 KIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDIAHTSVLKRA 251
++V++RHGE+ WN + G D +L++ G+Q+AV + L + I ++S LKRA
Sbjct: 575 ELVVVRHGETSWNSSRIVQGQMDPELNEIGKQQAVVVARRLARKARPAAI-YSSDLKRA 632
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 523 ESLKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVKHLD 657
ESL E+ + Y N V I G+++I+ HG ++ + +H D
Sbjct: 704 ESLNQLSEQGISYLNKVAQNHI--GERVIVVGHGAAILELCRHTD 746
>12_01_0228 -
1726856-1727049,1727280-1727355,1727454-1727585,
1727665-1727775,1727892-1727942,1728114-1728275,
1729558-1729584
Length = 250
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/59 (35%), Positives = 35/59 (59%)
Frame = +3
Query: 75 KIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDIAHTSVLKRA 251
++V++RHGE+ N + G D +L++ GRQ+AV + L E + ++S LKRA
Sbjct: 45 EVVVVRHGETSANALCIIQGQMDIELNEAGRQQAVMVARRLAKEAKPVAV-YSSDLKRA 102
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 523 ESLKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVKHLDDLS 666
ESL ER + Y N + +G+++I+ +HG S+ + +H D S
Sbjct: 165 ESLDQLSERCVSYLNTIAGKH--KGERVIVVSHGASIEELCRHADPTS 210
>11_01_0231 -
1791754-1791947,1792178-1792253,1792352-1792483,
1792563-1792673,1792790-1792840,1793012-1793122
Length = 224
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/59 (35%), Positives = 35/59 (59%)
Frame = +3
Query: 75 KIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDIAHTSVLKRA 251
++V++RHGE+ N + G D +L++ GRQ+AV + L E + ++S LKRA
Sbjct: 19 EVVVVRHGETSANALCIIQGQTDIELNEAGRQQAVMVARRLAKEAKPVAV-YSSDLKRA 76
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 523 ESLKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVKHLDDLS 666
ESL ER + Y N + +G+++I+ +HG S+ + +H D S
Sbjct: 139 ESLDQLSERCVSYLNTIAGKH--KGERVIVVSHGASIEELCRHADPTS 184
>11_01_0309 +
2312786-2313211,2313311-2313527,2313613-2313731,
2313921-2314019,2314498-2314551,2314635-2314733,
2314838-2314945,2315418-2315694,2316051-2316160,
2316425-2316493,2316608-2316714,2316754-2316792,
2317126-2317171,2317593-2317619
Length = 598
Score = 35.9 bits (79), Expect = 0.037
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 75 KIVMIRHGESEWNQKNLFCGWFDAD-LSDKGRQEAVAAGKALKAEGYQFDIAHTSVLKRA 251
++V++RHG+S WN + G D L+ KG +A + L ++ FD TS L R+
Sbjct: 55 RVVLVRHGQSTWNAEGRIQGSSDISVLTPKGESQAETSRLMLLSD--SFDACFTSPLARS 112
Query: 252 Q 254
+
Sbjct: 113 R 113
>01_01_0965 -
7589659-7589785,7590188-7590317,7590339-7590438,
7590524-7590643,7590910-7591145,7591585-7591714
Length = 280
Score = 33.1 bits (72), Expect = 0.26
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +3
Query: 48 LSNKM-PAKYKIVMIRHGESEWNQKNLFCGWFDAD-LSDKGRQEAVAAGKALKAEGYQFD 221
L+N+M KI ++RHG S WN ++ G + L++ G ++A AL +FD
Sbjct: 94 LTNEMLTLSKKITLVRHGLSTWNAESRVQGSSNLSVLTETGAKQAEKCRDAL--ANMKFD 151
Query: 222 IAHTSVLKRAQ 254
+ +S + RA+
Sbjct: 152 VCFSSPISRAK 162
>04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680
Length = 628
Score = 31.5 bits (68), Expect = 0.80
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +2
Query: 257 TLNSILKEIGQPDIPVEKTWRLNERHYGGLTGLNKAETAAKYGEAQV---QIWRRSFDVP 427
+L +I+ ++ PVEKT ++ YG L G N ET E + S
Sbjct: 310 SLPTIVDDVYSVPCPVEKTDSFSDIVYGALRGFNFLETGESIAEDSTLDSVVENSSMTDV 369
Query: 428 PPAMEKDHPYYDTIVNDPR 484
+ EKD D I++D R
Sbjct: 370 QASEEKDEARSDDILSDER 388
>06_01_0329 +
2383305-2384057,2385423-2385469,2386383-2386815,
2386852-2387034,2388388-2389044
Length = 690
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -2
Query: 719 FIYEGDAVGRFNSMIAASLRSSKCFTIPLRLLPWAAIMIFLP 594
F YEGD + F S++ A L+SS +P+ LP + + +LP
Sbjct: 318 FFYEGDDLPPFQSIVGA-LQSSLAAALPV-FLPLSGKLAYLP 357
>06_01_0172 + 1362101-1363708
Length = 535
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -3
Query: 412 AAPDLNLSLPVFGSCLSLVQSSEATIMPLVQS 317
AAP L SLPVF + LS + +++ ++P V S
Sbjct: 83 AAPPLPPSLPVFAAVLSRLPAADPALLPPVLS 114
>02_05_1136 +
34369994-34370312,34370398-34370550,34370648-34370745,
34371563-34371784
Length = 263
Score = 28.7 bits (61), Expect = 5.7
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Frame = -1
Query: 612 NNDLLAFFDLRHNNIVPVRQGSFNSEFQALVHRELSGFG----SAAYLGSLTMVS--*YG 451
N D +A F+++ +I G +SE+QA+V S F + +G ++S G
Sbjct: 107 NQDKIADFEMKLMDIDSEHLGIPDSEYQAIVRMPSSEFSRICKDLSSIGDTVIISVTKEG 166
Query: 450 *SFSMAGG-GTSKL-RRQI*T*ASPYLAAVSALFSPVRPP*CLSFNLQVFSTGISG*PIS 277
FS AG GT+ + RQ T P A + + PV L+F L+ ++ P+S
Sbjct: 167 VKFSTAGDIGTANIVCRQNKTVDKPEDATIIEMQEPV----SLTFALRYMNSFTKASPLS 222
Query: 276 FKIEFSVTGHV 244
++ S++ +
Sbjct: 223 EQVTISLSSEL 233
>11_02_0078 -
8074247-8074837,8075815-8076341,8076453-8077022,
8077725-8077752
Length = 571
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = -1
Query: 756 TPMESTGFKSHQVHIRRGCCRQIQFHDCCIA*II*VFHNTP*TVAMGSNNDLLAFFDLR 580
TP +T +H R C+ + C+ + ++ TP A+ S +D LA LR
Sbjct: 44 TPQGNTCLHISSIHGRESFCKDLMVLSPCLVAKVNLYGETPLLTAVTSGHDALASVLLR 102
>04_04_0207 + 23602065-23604315,23604611-23605116
Length = 918
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 102 SEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDIA 227
S W++ +C W + G VA G +L+ G DIA
Sbjct: 59 STWSRSTPYCNWSHVTCTAGGGGGGVAVGLSLQGLGLSGDIA 100
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 27.9 bits (59), Expect = 9.9
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Frame = +2
Query: 221 HCSHVCSK--TCPVTLNS--ILKEIGQPDI-PVEKTWRLNERHYGGLTGLNKAETAAKYG 385
HC + ++ + PV N +LK P I P WR NER G K TA+ Y
Sbjct: 331 HCQRIKNQDHSVPVQKNHSPVLKTNPSPRIIPEAAPWRQNERAVTGRAAEVKPRTASIYA 390
Query: 386 EAQ 394
+ Q
Sbjct: 391 DIQ 393
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,944,250
Number of Sequences: 37544
Number of extensions: 461278
Number of successful extensions: 1327
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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