Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1942
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.5  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   7.6  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   7.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 228  EQCQTDSLQLLKPYRQQQLLDDLCR*GQRRTIHR--RDSS 115
            +Q  +   Q+ +  R + L+D LCR  +R  + R  +DSS
Sbjct: 1310 QQQASSQQQIPESMRSKALIDQLCRNSRRTPVPRLAQDSS 1349


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +2

Query: 221 HCSHVCSKTCPVTLNSILKEIGQPD 295
           HCSH+C     +   S L     PD
Sbjct: 42  HCSHLCLPAPRINSKSPLLSCACPD 66


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +2

Query: 221 HCSHVCSKTCPVTLNSILKEIGQPD 295
           HCSH+C     +   S L     PD
Sbjct: 42  HCSHLCLPAPRINSKSPLLSCACPD 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,644
Number of Sequences: 438
Number of extensions: 4855
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)