Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1941
         (798 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    48   3e-04
UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    43   0.008
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    38   0.29 
UniRef50_Q0A6S3 Cluster: Phosphoenolpyruvate synthase; n=4; Prot...    33   6.3  
UniRef50_UPI0001556218 Cluster: PREDICTED: similar to Chain A, A...    33   8.3  
UniRef50_Q60CF6 Cluster: Putative membrane protein; n=1; Methylo...    33   8.3  
UniRef50_Q4DL23 Cluster: Putative uncharacterized protein; n=2; ...    33   8.3  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 48.0 bits (109), Expect = 3e-04
 Identities = 22/31 (70%), Positives = 26/31 (83%)
 Frame = -1

Query: 309 PQTQPVEFLARSSQWIAFRSGGRFCEALLLI 217
           P+TQP++FLA SSQ   FRS GRFCEALLL+
Sbjct: 70  PKTQPMKFLAGSSQSSRFRSDGRFCEALLLL 100



 Score = 36.7 bits (81), Expect = 0.67
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = -2

Query: 440 PADRMESGRRRPKYVISDPPDPLTVFLGTSSTDHRSRGSACKLPHRHSPLSFSPDLLSGS 261
           P D     RR P +V+SDP D L+V L  SST +      C++    +P +     L+GS
Sbjct: 26  PRDGATKSRRHPNHVLSDPRDSLSVLLDLSSTGY----CPCRVRRATNPKTQPMKFLAGS 81


>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=9; cellular organisms|Rep: Endonuclease and
            reverse transcriptase-like protein - Bombyx mori (Silk
            moth)
          Length = 960

 Score = 43.2 bits (97), Expect = 0.008
 Identities = 19/39 (48%), Positives = 28/39 (71%)
 Frame = -2

Query: 446  PDPADRMESGRRRPKYVISDPPDPLTVFLGTSSTDHRSR 330
            P+P     S RRRP++V++DP DP+T+ L T S++ RSR
Sbjct: 903  PNPDHAGASHRRRPRHVLTDPSDPITLALDTFSSNTRSR 941


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 37.9 bits (84), Expect = 0.29
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = -2

Query: 338 RSRGSACKLPHRHSPLSFSPDLLSGSRF 255
           ++ G + +  HR  PLSFSPDLLSGSRF
Sbjct: 382 KTTGHSTENEHRCCPLSFSPDLLSGSRF 409


>UniRef50_Q0A6S3 Cluster: Phosphoenolpyruvate synthase; n=4;
           Proteobacteria|Rep: Phosphoenolpyruvate synthase -
           Alkalilimnicola ehrlichei (strain MLHE-1)
          Length = 879

 Score = 33.5 bits (73), Expect = 6.3
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 368 VFLGTSSTDHRSRGSACKLPHRHSPLSFSPDLLSGSRFDPVVDSA 234
           V +     D+  +    K+  RHSP  F P    G RF PVVDS+
Sbjct: 166 VLIDVRRADNEMQVQPVKVWQRHSPTMFLPHRQRGERFLPVVDSS 210


>UniRef50_UPI0001556218 Cluster: PREDICTED: similar to Chain A,
           Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets; n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
           similar to Chain A, Aart, A Six Finger Zinc Finger
           Designed To Recognize Ann Triplets - Ornithorhynchus
           anatinus
          Length = 1064

 Score = 33.1 bits (72), Expect = 8.3
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = +1

Query: 214 GDQEQCFAESTTGSKRDPLRRSGEKLNGLCLWGNLHAEPRER*SVLEVPKNTVSGSGGSE 393
           GD +       +G++RDP    G  L G  LW +     + R +V   P  T   S G +
Sbjct: 645 GDPDSAEEYFASGAERDPAPLHG--LRGRMLWASGKGSRKRRLAVCPSPPLTAVSSAGVD 702

Query: 394 MTYFGRRRPL 423
           +   G  RPL
Sbjct: 703 LDRLGPGRPL 712


>UniRef50_Q60CF6 Cluster: Putative membrane protein; n=1;
           Methylococcus capsulatus|Rep: Putative membrane protein
           - Methylococcus capsulatus
          Length = 503

 Score = 33.1 bits (72), Expect = 8.3
 Identities = 18/82 (21%), Positives = 34/82 (41%)
 Frame = -2

Query: 788 VQRLPHPANENALLLHGRNRRGGSTYPCGLTGRPTNSNYANYNIAGFFILFITQCYSFTV 609
           V +LP    E  +L+  R   GG   P  +       N+      G  ++F+  C ++ +
Sbjct: 175 VLQLPVALYERIVLVPLRVGMGGGIVPIDIVAGTFEPNFEGGGENGTMVIFLVACLAYVL 234

Query: 608 EVNREHLISTYFI*KICIRCGI 543
              RE ++ST +     +  G+
Sbjct: 235 TAWRERVLSTLWAAAFAVELGV 256


>UniRef50_Q4DL23 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 1276

 Score = 33.1 bits (72), Expect = 8.3
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +1

Query: 169 LRGYFSVTLTSR*AYGDQ--EQCFAESTTGSKRDPLRRSGEKLNGLCLWGNLHAEPRER* 342
           L G  S+ L S+    D+   +CF   T GS R  +   G  LNG C   + H+ P+E+ 
Sbjct: 96  LEGSISLQLCSQSLEKDKILGECFESQTNGSGRS-MAGDGMPLNGSCRLVSPHSFPKEKQ 154

Query: 343 SVL 351
           SVL
Sbjct: 155 SVL 157


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 822,900,445
Number of Sequences: 1657284
Number of extensions: 17395413
Number of successful extensions: 42960
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 41183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42955
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68319938570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)