Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1941
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    27   2.4  
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch...    27   4.1  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   5.4  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    26   7.2  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   9.5  

>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 422 SGRRRPKYVISDPPDPLTVFLGTSSTDHRSR 330
           +GR +P   + D  D L   LGT  T HR R
Sbjct: 126 AGRTKPAAFLQDEDDDLDSNLGTGFTRHRHR 156


>SPAC1952.15c |rec24|mug6|meiotic recombination protein
           Rec24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 350

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 423 KRSTSPKIRHFGSSRSTNGVFRYLK 349
           KR TS  + H     + NG+FR+LK
Sbjct: 121 KRQTSGSLAHLDIEYTFNGLFRFLK 145


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 428  MESGRRRPKYVISDPPDPLTVFLGTSSTDHRS 333
            ME+G+RRPKY I    +P+   LG   +D+++
Sbjct: 940  MENGKRRPKYRIRLSGNPI---LGDGKSDNQN 968


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
 Frame = -2

Query: 464 SRKVCIPDP-ADRMESGRRRPKYVIS----DPPDPLTVFLGTSSTDHRSRGSACKLPHRH 300
           S  + +P+P +++M +G  +   +      +P  PLT  +   S +     ++ +     
Sbjct: 347 SSAIPLPNPMSEKMRNGASKQAIMAQSSKINPLPPLTASISDPSFEKLKNTASKQAIESQ 406

Query: 299 SPLSFSPDLLSGSRFDPVVDSAK 231
           S ++  P+LL  S  DP+++  K
Sbjct: 407 SLMNSGPELLEPSISDPMLEKMK 429


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
 Frame = -2

Query: 392 SDPPDPLTVFLGTSST---DHRSRGSACKLPHRHSPLSFSPDL 273
           S P  P T F  T      D R RG+    P    PL FSP L
Sbjct: 312 STPSKPNTSFFETPHNNIWDSRDRGAFSAPPAPFFPLGFSPHL 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,365,781
Number of Sequences: 5004
Number of extensions: 71688
Number of successful extensions: 204
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)