Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1941
(798 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1047 + 25666113-25666442,25666606-25666651,25667042-256671... 32 0.61
12_01_0801 + 7351171-7351198,7351383-7352020,7352098-7352559,735... 31 1.4
12_01_0845 + 7918638-7919423 30 2.5
02_03_0337 + 17898732-17899370,17899516-17899977,17900058-179006... 29 4.3
05_07_0336 - 29364751-29365584 29 5.7
09_03_0196 + 13374054-13374456,13375145-13375707,13375935-133759... 28 9.9
07_01_0985 - 8297560-8297610,8297728-8297939,8298327-8298449,829... 28 9.9
04_04_0903 - 29269794-29270141,29270227-29270751 28 9.9
02_05_0311 + 27782110-27782326,27784121-27784268,27784394-277844... 28 9.9
>12_02_1047 +
25666113-25666442,25666606-25666651,25667042-25667130,
25667291-25667493,25667807-25667949,25668286-25668332,
25668794-25668870,25668952-25668981,25669068-25669163,
25669489-25669591,25669959-25670041,25670204-25670326,
25670465-25670576,25670791-25670898,25671006-25671593
Length = 725
Score = 31.9 bits (69), Expect = 0.61
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = -3
Query: 463 VGKFAFLILRTEWKAVDVAQNTSFRILPIH 374
+GK FL LR WK V++ +TS+ ILPIH
Sbjct: 386 LGKGEFLKLRRWWKGVNI-YHTSYIILPIH 414
>12_01_0801 +
7351171-7351198,7351383-7352020,7352098-7352559,
7352641-7353105
Length = 530
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = -2
Query: 416 RRRPKYVISDPPDPLTVFLGTSSTDHRSRGSACKLPHRHSPLSFSPDLLSGSRFDPVVDS 237
+ R ++ P P ++ DH + C L R P +F+P++ G F+P V
Sbjct: 349 QHRSSCASTEVPAPGLPLAPLAAVDHIEGVAQCVLLARLHP-TFAPEVAEGMAFEPSVTD 407
Query: 236 AKHCS 222
HC+
Sbjct: 408 KVHCA 412
>12_01_0845 + 7918638-7919423
Length = 261
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -3
Query: 529 IARYVSMLNGERVFIAHEVAT 467
+A Y+ +L GER+F+AH +AT
Sbjct: 102 LAHYLVLLPGERLFVAHHLAT 122
>02_03_0337 +
17898732-17899370,17899516-17899977,17900058-17900688,
17900819-17900888,17900971-17901141,17901221-17901479,
17901918-17901956,17902900-17902914
Length = 761
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = -2
Query: 416 RRRPKYVISDPPDPLTVFLGTSSTDHRSRGSACKLPHRHSPLSFSPDLLSGSRFDPVVDS 237
+ R ++ P P ++ DH + C L R P +F+P++ G F P V
Sbjct: 340 QHRSSCASTEVPAPGLPVAPLAAVDHIEGVAQCVLLARVHP-TFAPEVAEGMAFKPSVTD 398
Query: 236 AKHCS 222
HC+
Sbjct: 399 KVHCA 403
>05_07_0336 - 29364751-29365584
Length = 277
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -2
Query: 773 HPANENALLLHGRNRRGGSTYPCGLTGRPTNSNY-ANYN 660
H +N+ AL + N TY GRP N+N+ NYN
Sbjct: 41 HSSNKLALANNSNNNATAKTYFNKSVGRPANNNFNFNYN 79
>09_03_0196 +
13374054-13374456,13375145-13375707,13375935-13375976,
13376059-13376087,13376309-13376534,13376970-13377008,
13377126-13377155
Length = 443
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 338 RSRGSACKLPHRHSPLSFSPDLLSGSRFDPVVDSAKH 228
R+RG + P P +F+P++ G F P V H
Sbjct: 132 RARGRSTVCPTGEDPPTFAPEVAEGMAFKPSVTDKVH 168
>07_01_0985 -
8297560-8297610,8297728-8297939,8298327-8298449,
8298763-8298817,8299940-8300077,8300187-8300261,
8300339-8300398,8301335-8301392,8301948-8302054,
8302484-8302558,8302643-8302838,8304222-8304301,
8308887-8309757,8310672-8310679
Length = 702
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 770 PANENALLLHGRNRRGGSTYPCGLTGRPTN 681
P N L+ G NRRGG P G+ +PTN
Sbjct: 295 PRNGGNLVERGSNRRGG---PGGVVSKPTN 321
>04_04_0903 - 29269794-29270141,29270227-29270751
Length = 290
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 743 HGRNRRGGSTYPCGLTG 693
HGR+RR G TYP L G
Sbjct: 54 HGRHRRTGVTYPVSLPG 70
>02_05_0311 +
27782110-27782326,27784121-27784268,27784394-27784478,
27784555-27784650,27785666-27785731,27785900-27785998,
27786145-27786258,27786468-27786578,27786672-27786734,
27786816-27786908,27787960-27788073,27788440-27788505,
27788782-27788994,27789086-27789116,27789459-27791587
Length = 1214
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 387 SSRSTNGVFRYLKHRSSFSGLG 322
+ R TNG +LKHRS +S +G
Sbjct: 450 AKRKTNGKLIHLKHRSLYSSMG 471
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,595,469
Number of Sequences: 37544
Number of extensions: 494530
Number of successful extensions: 1246
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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