Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1941
         (798 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z69787-12|CAM84810.1|  234|Caenorhabditis elegans Hypothetical p...    29   5.1  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    29   5.1  

>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 275  DLARNSTGCVCGVIYTPSPENDDRCLRYLKTPLVDREDPK*RI 403
            D+ R + G    VIYTPS EN +  LR ++   +   D K R+
Sbjct: 2301 DVVRRANGIRMAVIYTPSRENVEGVLRDVQRLKMSIGDVKKRV 2343


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 275  DLARNSTGCVCGVIYTPSPENDDRCLRYLKTPLVDREDPK*RI 403
            D+ R + G    VIYTPS EN +  LR ++   +   D K R+
Sbjct: 2301 DVVRRANGIRMAVIYTPSRENVEGVLRDVQRLKMSIGDVKKRV 2343


>Z69787-12|CAM84810.1|  234|Caenorhabditis elegans Hypothetical
           protein C44C10.9b protein.
          Length = 234

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 22/76 (28%), Positives = 34/76 (44%)
 Frame = +1

Query: 241 STTGSKRDPLRRSGEKLNGLCLWGNLHAEPRER*SVLEVPKNTVSGSGGSEMTYFGRRRP 420
           STTG+K   LR +GE ++        ++ P +  S       T S +GG +  Y G  R 
Sbjct: 105 STTGNKYSALRNNGELVDEYAFQEQKYSTPDDIYSAYGRKYETGSRNGGYKNGY-GNGRN 163

Query: 421 LSILSAGSGMQTFRLR 468
           L +  +G     +R R
Sbjct: 164 LDVERSGGPDDGYRRR 179


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
            protein.
          Length = 3674

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 275  DLARNSTGCVCGVIYTPSPENDDRCLRYLKTPLVDREDPK*RI 403
            D+ R + G    VIYTPS EN +  LR ++   +   D K R+
Sbjct: 2301 DVVRRANGIRMAVIYTPSRENVEGVLRDVQRLKMSIGDVKKRV 2343


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,972,596
Number of Sequences: 27780
Number of extensions: 416744
Number of successful extensions: 1095
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)