Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1940
         (784 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   3.6  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    22   6.4  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    22   6.4  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   8.4  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   8.4  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 528 CPIRPRRSIIVDLSISSARQVDGRGC 451
           CP+  R SI+ ++ + +   V G GC
Sbjct: 729 CPVLLRVSILRNIIVGTLMMVLGTGC 754


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -3

Query: 743 DHLHHSFARRRQLYYLYKLVGMS 675
           D LH+ +   + +Y + KL+G++
Sbjct: 16  DTLHNIYTSMKPVYAICKLIGLN 38


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -3

Query: 743 DHLHHSFARRRQLYYLYKLVGMS 675
           D LH+ +   + +Y + KL+G++
Sbjct: 16  DTLHNIYTSMKPVYAICKLIGLN 38


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +2

Query: 653 GNVRGFVRSSRPIYKDSRVADAARKNGASDPL 748
           GN  GF  S  P+YK      A  K   +D L
Sbjct: 218 GNWAGFADSHSPLYKRPHDQWAYEKLNVNDGL 249


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -1

Query: 337 SLIYHSTINLSLSHHRHIIITFN*SHHIFEAHVLSLH*LKRAFLFH 200
           +L++ + +N+   HH+  +     S  +   H LSL    +A L H
Sbjct: 304 NLLHSNDLNMHQQHHQQNMSHEELSAMVNRCHPLSLSSDHQAMLHH 349


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,070
Number of Sequences: 336
Number of extensions: 3503
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)