Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1940
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    67   2e-12
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    58   2e-09
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    46   8e-06
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    31   0.14 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    30   0.33 
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    30   0.33 
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    28   1.7  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    27   2.3  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    27   4.0  
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    27   4.0  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    25   9.3  
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    25   9.3  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.3  

>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 28/85 (32%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
 Frame = +3

Query: 513 EDESDSDLGSMENHG-SVVTHLLSQVKIGMDLTKVVLPTFILERRSLLEMYADSFAHPDQ 689
           +++ D D   +E+ G +++  ++SQ++  MDL+KV  PTF+LE +S+LE   +  +HPD 
Sbjct: 13  DEKQDRDAEEIEDEGKNIILGIVSQLRPNMDLSKVTFPTFVLEPKSMLERITNFMSHPDL 72

Query: 690 FIKIVELPTPRERMVQVIRWYLSSF 764
            + + +   P  R + V+R+Y+S +
Sbjct: 73  LLNVQKTADPEMRFLDVVRFYMSGW 97


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 26/64 (40%), Positives = 41/64 (64%)
 Frame = +3

Query: 576 LSQVKIGMDLTKVVLPTFILERRSLLEMYADSFAHPDQFIKIVELPTPRERMVQVIRWYL 755
           L + K   DL+ +  P+FIL   SLLE  +  F  P+ F+ IV+ PTP+ERM+ V++WY+
Sbjct: 31  LEKKKSTGDLSTLSAPSFILSGTSLLEYMSYWFEFPELFVTIVDFPTPKERMLAVLKWYI 90

Query: 756 SSFT 767
           +  +
Sbjct: 91  TGLS 94


>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 45.6 bits (103), Expect = 8e-06
 Identities = 28/85 (32%), Positives = 42/85 (49%)
 Frame = +3

Query: 507 SYEDESDSDLGSMENHGSVVTHLLSQVKIGMDLTKVVLPTFILERRSLLEMYADSFAHPD 686
           S + E D  L S     + ++ L S      DL+ +  P+FIL   SL+E  A    HP+
Sbjct: 10  SRDGEGDKRLRSTTK-STWLSFLKSIATFSGDLSSLTAPSFILSSTSLIEYSAYWAEHPE 68

Query: 687 QFIKIVELPTPRERMVQVIRWYLSS 761
            FI +    TP ER + V +W+ S+
Sbjct: 69  LFISLPRGETPLERQLLVTKWFAST 93


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +3

Query: 591  IGMDLTKVVLPTFILERRSLLEMYADSFAHPDQFIKIVELPTPRERMVQVIRWYLSSFTP 770
            IG D+TK+ LP    E  SLL+  A+   + +   +      P +R++ V  +  S +  
Sbjct: 946  IGKDMTKMTLPVSFNEPTSLLQRVAEDMEYTELLDQASHNKDPYQRILYVAAFAASEYAS 1005

Query: 771  VASR 782
              +R
Sbjct: 1006 TLNR 1009


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 597 MDLTKVVLPTFILERRSLLEMYADSFAH--PDQFIKIVELPTP 719
           +D +    P+ +LE + LLEM A  F H  P  F++I+E   P
Sbjct: 624 LDSSLTTNPSKLLEEKELLEMLATLFLHLDPSVFVEILESEFP 666


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 549 SPSIRGHCPIRPRRSIIVDLSISSA 475
           SPS +GH P+RP  S  +  SIS+A
Sbjct: 198 SPSYKGHAPVRPFSSHTIFFSISNA 222


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
 Frame = -2

Query: 720 AASATLLSL*IGRDERTNPRTFPIAIVFPV*KSGAQPL*DPFRS*PATG-DA*QPSRGSP 544
           AASA+ LS   GR    N  TFP A+     +S  +P      S P+      Q +  S 
Sbjct: 204 AASASALSSDTGRSATMNSTTFPTAMKS---QSTTKPTLSNSVSSPSIQVSNNQNANNST 260

Query: 543 SIRGHCPIRPRRSIIVDLSISSARQVDGR 457
            +  H PI P     V L+ +S    DG+
Sbjct: 261 PLSFHAPIPPLHVPAVPLTSASHSSSDGK 289


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 425 EGTPEQDSAQPRPSTCLALEMERSTMMLLRGR 520
           +GTPE  + +PRP     L  +  TM+L+R R
Sbjct: 97  QGTPEPSNTRPRPQ----LNAQEQTMLLVRHR 124


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = -3

Query: 584 LRQEMRDNRAVVLHRSEVTVRFVLVGAS*SISPSLVRGRSTVAAAPSLARACPPPDDSCN 405
           L +E+ D +A+   ++++     +VG   SI   +     T+ A  SL R C    DS +
Sbjct: 314 LVKELEDTKAITPEQAKLYRHLTIVGLVGSIDNDMSSTDVTIGAFSSLHRICEAV-DSIS 372

Query: 404 AFAVPSQR 381
           + A+   R
Sbjct: 373 STAISHSR 380


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 618 LPTFILERRSLLEMYADSFAHPDQFIKIVELPTPRERMVQVIRWYLS 758
           LP  +LE    LE Y +    PD F  + +     ERM+ V+RW+ +
Sbjct: 63  LPAQLLEPVGNLE-YWNYVDRPDYFAVMGDSDDELERMLGVLRWWFT 108


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 24  LRRCHPPPPDRYKRSTHRQKSLGLSNLVPKIL 119
           L   HP  P R      + KSL L NL+P I+
Sbjct: 377 LYNSHPDHPLRVHAQFMKDKSLELINLIPDIV 408


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 395 QRKRYKNHPAEGTPEQDSAQPRPSTCLALEMERST 499
           Q K +    ++  PE+  A P PS   +   ERST
Sbjct: 252 QPKEHSPATSKHEPEETPASPTPSVSASTSRERST 286


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 377  SPRCQGSQHNELLITNISQYYKFITITSSA 288
            +P C+ + + EL    IS +Y F+ IT SA
Sbjct: 2011 TPACRFAANAELKSQTISNHYPFMHITISA 2040


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,417
Number of Sequences: 5004
Number of extensions: 57644
Number of successful extensions: 152
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)