Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1940
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1081 + 33971950-33972606                                         31   1.4  
09_01_0011 + 291315-292277                                             29   3.2  
10_08_0304 - 16640937-16642877                                         29   5.5  
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497...    28   7.3  
04_04_0057 + 22410167-22411330                                         28   7.3  
02_03_0369 - 18239123-18239499,18242046-18242445                       28   7.3  
12_01_0934 - 9273325-9273807,9273898-9274062,9274155-9274235,927...    28   9.6  
02_05_0397 + 28641033-28641231,28641385-28641485,28642012-286420...    28   9.6  

>02_05_1081 + 33971950-33972606
          Length = 218

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -3

Query: 488 PSLVRGRSTVAAAPSLARACPPPDDSCNAFAVPSQRPSP--RCQGSQHNEL 342
           P  V   S+     S AR   PP  +  A AVP  R SP  R QGS   EL
Sbjct: 42  PPKVAAVSSPPVVKSAARVASPPPKAAAAAAVPQGRRSPVARKQGSPTKEL 92


>09_01_0011 + 291315-292277
          Length = 320

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -3

Query: 509 GAS*SISPSLVRGRSTVAAAPSLARACPPPDDSCNAFAVPSQRPSPRCQGSQHNELLI 336
           G+  S SP +   +   A   S     PP +++  +   P  RPSP  + S+   LL+
Sbjct: 29  GSGTSSSPPVHEAQQAAARRRSARTKKPPEEEAAGSQPQPKTRPSPASKASKAKVLLL 86


>10_08_0304 - 16640937-16642877
          Length = 646

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 12  RSRTLRRCHPPPPDRYKRSTHRQKS 86
           RSR L R  PPPP + +R   R++S
Sbjct: 622 RSRELTRPPPPPPQQQQRDRERRRS 646


>07_03_0493 +
           18747427-18748356,18748594-18748697,18749586-18749795,
           18749992-18750597,18750819-18751095,18751163-18751310,
           18751957-18752044,18752167-18752284
          Length = 826

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = -3

Query: 467 STVAAAPSLARACPPPDDSCNAFAVPSQRPSPRCQGSQHN 348
           ST    PS A +  P     N    P Q P PRC   QH+
Sbjct: 13  STPWRDPSRASSRQPARGFFNILVPPPQSPRPRCPDHQHH 52


>04_04_0057 + 22410167-22411330
          Length = 387

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -3

Query: 428 PPPDDSCNAFAVPSQRPSPRCQGS 357
           PPP     A A PS   SPRCQ S
Sbjct: 184 PPPPPPAAAAASPSPERSPRCQPS 207


>02_03_0369 - 18239123-18239499,18242046-18242445
          Length = 258

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -3

Query: 491 SPSLVRGRSTVAAAPSLARACPPP 420
           +PSL R  S  A+APS A A PPP
Sbjct: 15  APSLRRLLSATASAPSPAAASPPP 38


>12_01_0934 -
           9273325-9273807,9273898-9274062,9274155-9274235,
           9274347-9274475,9274590-9274661,9274758-9274826,
           9275143-9275514,9275590-9275703,9275729-9275848
          Length = 534

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 404 RYKNHPAEGTPEQDSAQPRPSTCLALEMERSTMMLLRGR 520
           R +N P++GT  +D  Q  P T + +  E++     R R
Sbjct: 382 RIENEPSDGTRRKDDIQINPWTLIKMSKEKAMAAAERAR 420


>02_05_0397 +
           28641033-28641231,28641385-28641485,28642012-28642068,
           28642087-28642295,28642378-28642924
          Length = 370

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +2

Query: 557 LGCHASPVAGQDRNGSHKGCA-PD 625
           LGC A PV    R+G   GCA PD
Sbjct: 253 LGCRADPVLRAPRDGGGAGCAEPD 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,593,977
Number of Sequences: 37544
Number of extensions: 435263
Number of successful extensions: 1624
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1622
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)