Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1940
         (784 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ010299-1|CAA09070.1|  722|Anopheles gambiae stat protein.            27   0.50 
AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein ...    24   4.6  
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    24   6.1  
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          23   8.1  

>AJ010299-1|CAA09070.1|  722|Anopheles gambiae stat protein.
          Length = 722

 Score = 27.5 bits (58), Expect = 0.50
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 428 PPPDDSCNAFAVPSQRPSPRCQGSQHNELLITNISQYYKF 309
           P  + S ++     Q PS   + +  NE ++TN+ + YKF
Sbjct: 666 PSSNQSSSSTPNAEQSPSASSKDTFSNEYVLTNLDEIYKF 705


>AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein
           protein.
          Length = 699

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 724 SRGVGNSTIFINWSG*ANESAYISNSDRLSSIKVGST 614
           S G+GN T++++W   ++ S + S S R  +I   ST
Sbjct: 190 SEGIGNRTLYMSWP--SSWSVFSSASQR-GAISFAST 223


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 641 SFQYKSREHNLCEIHSDLDLRQEMRDNRAVV 549
           SF+YK  ++   +++  +DL   MRD++A +
Sbjct: 128 SFKYKPAKNYPLDMYYLMDLTWSMRDDKATL 158


>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 629 KSREHNLCEIHSDLDLRQEMR-DNRAVVLHRS 537
           K R+H LCE++ +   R+E +    A V+ R+
Sbjct: 320 KLRKHRLCELNREPTEREEQQMQKEAAVMART 351


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 770,485
Number of Sequences: 2352
Number of extensions: 16381
Number of successful extensions: 28
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81913191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)