Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1940
(784 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000195-8|AAN84853.1| 400|Caenorhabditis elegans Oxysterol bin... 110 1e-24
AF000195-7|AAC24270.1| 676|Caenorhabditis elegans Oxysterol bin... 110 1e-24
Z78541-3|CAD44120.1| 733|Caenorhabditis elegans Hypothetical pr... 73 2e-13
Z70269-4|CAA94223.2| 733|Caenorhabditis elegans Hypothetical pr... 73 2e-13
Z70269-1|CAD44161.1| 770|Caenorhabditis elegans Hypothetical pr... 73 2e-13
U23520-3|AAC46555.2| 470|Caenorhabditis elegans Hypothetical pr... 32 0.40
U23520-2|AAR25655.1| 485|Caenorhabditis elegans Hypothetical pr... 32 0.40
AL117204-38|CAL49444.1| 982|Caenorhabditis elegans Hypothetical... 29 5.0
AL117204-31|CAB55122.2| 727|Caenorhabditis elegans Hypothetical... 29 5.0
Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical pr... 28 6.6
U80844-4|AAB37974.1| 192|Caenorhabditis elegans Hypothetical pr... 28 6.6
U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death abno... 28 6.6
AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate ada... 28 6.6
Z83318-4|CAB05900.1| 145|Caenorhabditis elegans Hypothetical pr... 28 8.7
>AF000195-8|AAN84853.1| 400|Caenorhabditis elegans Oxysterol
binding protein (osbp)related protein 4, isoform b
protein.
Length = 400
Score = 110 bits (264), Expect = 1e-24
Identities = 52/86 (60%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
Frame = +3
Query: 510 YEDESDSDLGSME-NHGSVVTHLLSQVKIGMDLTKVVLPTFILERRSLLEMYADSFAHPD 686
Y + + D+G+++ +HGSV+ HLLSQV +GMDLTKV LPTFILERRSLLEMYAD FAHPD
Sbjct: 21 YNNAEEHDIGNVQQDHGSVLMHLLSQVSVGMDLTKVTLPTFILERRSLLEMYADFFAHPD 80
Query: 687 QFIKIVELPTPRERMVQVIRWYLSSF 764
FI + +RM+ V+R+YL+SF
Sbjct: 81 LFIATNGNDSAEKRMIAVVRYYLNSF 106
>AF000195-7|AAC24270.1| 676|Caenorhabditis elegans Oxysterol
binding protein (osbp)related protein 4, isoform a
protein.
Length = 676
Score = 110 bits (264), Expect = 1e-24
Identities = 52/86 (60%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
Frame = +3
Query: 510 YEDESDSDLGSME-NHGSVVTHLLSQVKIGMDLTKVVLPTFILERRSLLEMYADSFAHPD 686
Y + + D+G+++ +HGSV+ HLLSQV +GMDLTKV LPTFILERRSLLEMYAD FAHPD
Sbjct: 297 YNNAEEHDIGNVQQDHGSVLMHLLSQVSVGMDLTKVTLPTFILERRSLLEMYADFFAHPD 356
Query: 687 QFIKIVELPTPRERMVQVIRWYLSSF 764
FI + +RM+ V+R+YL+SF
Sbjct: 357 LFIATNGNDSAEKRMIAVVRYYLNSF 382
>Z78541-3|CAD44120.1| 733|Caenorhabditis elegans Hypothetical
protein ZK1086.1a protein.
Length = 733
Score = 72.9 bits (171), Expect = 2e-13
Identities = 36/73 (49%), Positives = 50/73 (68%)
Frame = +3
Query: 546 ENHGSVVTHLLSQVKIGMDLTKVVLPTFILERRSLLEMYADSFAHPDQFIKIVELPTPRE 725
E + S++ LL Q++ GMDL+KVVLPTFILE RS LE AD + H D + V P P +
Sbjct: 265 EENKSLIWTLLKQIRPGMDLSKVVLPTFILEPRSFLEKLADYYYHADLISEAVAEPDPFQ 324
Query: 726 RMVQVIRWYLSSF 764
R+V+V +++LS F
Sbjct: 325 RIVKVTKFFLSGF 337
>Z70269-4|CAA94223.2| 733|Caenorhabditis elegans Hypothetical
protein ZK1086.1a protein.
Length = 733
Score = 72.9 bits (171), Expect = 2e-13
Identities = 36/73 (49%), Positives = 50/73 (68%)
Frame = +3
Query: 546 ENHGSVVTHLLSQVKIGMDLTKVVLPTFILERRSLLEMYADSFAHPDQFIKIVELPTPRE 725
E + S++ LL Q++ GMDL+KVVLPTFILE RS LE AD + H D + V P P +
Sbjct: 265 EENKSLIWTLLKQIRPGMDLSKVVLPTFILEPRSFLEKLADYYYHADLISEAVAEPDPFQ 324
Query: 726 RMVQVIRWYLSSF 764
R+V+V +++LS F
Sbjct: 325 RIVKVTKFFLSGF 337
>Z70269-1|CAD44161.1| 770|Caenorhabditis elegans Hypothetical
protein ZK1086.1b protein.
Length = 770
Score = 72.9 bits (171), Expect = 2e-13
Identities = 36/73 (49%), Positives = 50/73 (68%)
Frame = +3
Query: 546 ENHGSVVTHLLSQVKIGMDLTKVVLPTFILERRSLLEMYADSFAHPDQFIKIVELPTPRE 725
E + S++ LL Q++ GMDL+KVVLPTFILE RS LE AD + H D + V P P +
Sbjct: 302 EENKSLIWTLLKQIRPGMDLSKVVLPTFILEPRSFLEKLADYYYHADLISEAVAEPDPFQ 361
Query: 726 RMVQVIRWYLSSF 764
R+V+V +++LS F
Sbjct: 362 RIVKVTKFFLSGF 374
>U23520-3|AAC46555.2| 470|Caenorhabditis elegans Hypothetical
protein C35B8.3a protein.
Length = 470
Score = 32.3 bits (70), Expect = 0.40
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 678 HPDQFIKIVELPTPRERMVQVIRWYLSSFTPVA 776
HPD++ K E+ T E+ +Q+ Y++ PV+
Sbjct: 36 HPDKYAKFPEIQTQNEKSLQIFNGYMNDLFPVS 68
>U23520-2|AAR25655.1| 485|Caenorhabditis elegans Hypothetical
protein C35B8.3b protein.
Length = 485
Score = 32.3 bits (70), Expect = 0.40
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 678 HPDQFIKIVELPTPRERMVQVIRWYLSSFTPVA 776
HPD++ K E+ T E+ +Q+ Y++ PV+
Sbjct: 51 HPDKYAKFPEIQTQNEKSLQIFNGYMNDLFPVS 83
>AL117204-38|CAL49444.1| 982|Caenorhabditis elegans Hypothetical
protein Y116A8C.16c protein.
Length = 982
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = -2
Query: 549 SPSIRGHCPIRPRRSIIVDLSISSARQVDGRGCAESCSGVPSAG 418
SP+ + P+ PR S+ ++I+ + +G ++ +G+PS+G
Sbjct: 857 SPNTVPNTPLMPRGSMSTMINIAETPTMTAQGYSQLANGLPSSG 900
>AL117204-31|CAB55122.2| 727|Caenorhabditis elegans Hypothetical
protein Y116A8C.16a protein.
Length = 727
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = -2
Query: 549 SPSIRGHCPIRPRRSIIVDLSISSARQVDGRGCAESCSGVPSAG 418
SP+ + P+ PR S+ ++I+ + +G ++ +G+PS+G
Sbjct: 602 SPNTVPNTPLMPRGSMSTMINIAETPTMTAQGYSQLANGLPSSG 645
>Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical
protein T20G5.5 protein.
Length = 1234
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 635 QYKSREHNLCEIHSDLDLRQEMRDNRAVVLHRSEVT 528
Q K+ E N E H+ + +++RD+ +LHR +T
Sbjct: 396 QQKNEERNFIEFHNPTGIEKQIRDSGG-ILHRKMLT 430
>U80844-4|AAB37974.1| 192|Caenorhabditis elegans Hypothetical
protein C07D8.2 protein.
Length = 192
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -3
Query: 566 DNRAVVLHRSEVTVRFVLVGAS*SISPSLVRGRSTVAAAPSLARACPPPDDS 411
DN + LH E+ + +L A+ SP ++ AAAP+L A PP S
Sbjct: 4 DNEGMSLH-DELQIANLLDPANPQRSPMAPAAPTSSAAAPTLTAAAPPSSAS 54
>U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death
abnormality protein 6 protein.
Length = 492
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = -2
Query: 624 SGAQPL*DPFRS*PATGDA*QPSRGSPSIRGHCPIRPRRSIIVDLSISSARQVDG--RGC 451
+GA P P + P+ P P++ P+ PRR+ +V S+A +DG G
Sbjct: 298 NGASPSVSPASTSPSGPAPSIPPPRPPALAPPPPVAPRRNPVVSPKNSTAGLLDGLELGS 357
Query: 450 AESCSGVPS 424
AE PS
Sbjct: 358 AEPAKKAPS 366
>AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate
adaptor protein CED-6 protein.
Length = 492
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = -2
Query: 624 SGAQPL*DPFRS*PATGDA*QPSRGSPSIRGHCPIRPRRSIIVDLSISSARQVDG--RGC 451
+GA P P + P+ P P++ P+ PRR+ +V S+A +DG G
Sbjct: 298 NGASPSVSPASTSPSGPAPSIPPPRPPALAPPPPVAPRRNPVVSPKNSTAGLLDGLELGS 357
Query: 450 AESCSGVPS 424
AE PS
Sbjct: 358 AEPAKKAPS 366
>Z83318-4|CAB05900.1| 145|Caenorhabditis elegans Hypothetical
protein F55B11.4 protein.
Length = 145
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 558 SRGSPSIRGHCPIRPRRSIIVDLSISSARQVDGRGCAESCSGVP 427
S GSP I HCP R S ++ + + V +GCA C +P
Sbjct: 28 SCGSP-ITQHCP---RHSGCYTMTTNFGQTVISKGCAHDCQNLP 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,878,081
Number of Sequences: 27780
Number of extensions: 349888
Number of successful extensions: 1022
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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