Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1940
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   4.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 410  KNHPAEGTPEQDSAQPRPSTCLAL 481
            + H AEG PEQ    P  +TC  L
Sbjct: 1073 RQHTAEGVPEQ---PPHDTTCTTL 1093


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 610  RLCSRLLYWKDDRYWKCTRIRSLIPT 687
            R  + +L W + R+W+  R+R  IP+
Sbjct: 1183 RTAAAILTWNEKRFWE--RLRYAIPS 1206



 Score = 21.8 bits (44), Expect = 7.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 467  STVAAAPSLARACPPPDDSCNAFAVPSQRPSP 372
            S+ A A  L  A  PP  SC   +VP Q+  P
Sbjct: 1257 SSPATALMLQHA--PPAYSCGTVSVPQQQQLP 1286


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 127 KGSKILGTRFDSPRL 83
           K SK+ G+RFD  RL
Sbjct: 289 KSSKMFGSRFDEERL 303


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 461 VAAAPSLARACPPPDDSCNAFAVPSQR 381
           +A+APS + +  PP     A   PS+R
Sbjct: 517 IASAPSSSTSSSPPAKGAAAAGQPSKR 543


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,028
Number of Sequences: 438
Number of extensions: 4470
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)