Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1939
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0971 - 21949721-21949936,21950051-21950484,21950599-219507...    31   1.4  
08_02_1461 - 27299891-27301870                                         29   5.5  
02_05_0053 - 25442186-25443189,25444359-25444914                       29   5.5  
02_02_0547 + 11399769-11399852,11399906-11400088,11400474-114005...    29   5.5  
08_01_0505 - 4379722-4380795,4380868-4381008,4381099-4381270,438...    28   9.7  
04_04_1683 + 35345506-35345581,35346171-35346343,35346706-353467...    28   9.7  

>10_08_0971 -
           21949721-21949936,21950051-21950484,21950599-21950791,
           21950909-21951007,21951114-21951191,21951275-21951669,
           21954317-21954482,21954840-21954927,21955015-21955127,
           21955242-21955426,21955840-21955987,21956071-21956349,
           21956425-21956529,21956892-21957137,21957367-21957408,
           21957539-21957613
          Length = 953

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 103 KFISGNTLYVKAEVSGKSNPQNYNLRNHWW 192
           +F++  TL    +VSG   P N NL+N W+
Sbjct: 207 RFVNKKTLRPSLDVSGPVQPYNPNLKNFWY 236


>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 697 KRLFRGRNRQGGGTYPRGL 641
           K+L RGR R GGG + RGL
Sbjct: 288 KKLLRGRRRGGGGGHRRGL 306


>02_05_0053 - 25442186-25443189,25444359-25444914
          Length = 519

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
 Frame = -3

Query: 292 TTATPTFEPKRITLHGGNRRGGG----TYPCGLPRG 197
           T   P F  +R+   GGN  GGG    ++P G+P G
Sbjct: 50  TVVLPDFIHRRVVRAGGNGGGGGVALASFPSGIPGG 85


>02_02_0547 +
           11399769-11399852,11399906-11400088,11400474-11400578,
           11400690-11400773,11400938-11401053,11401158-11401259,
           11401339-11401452,11401540-11401596,11401681-11401873,
           11402261-11402335,11402425-11402460,11402509-11402574,
           11402575-11402688
          Length = 442

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 711 HRSNRNDCFAAEIGRVVVPTRADSQEVLPP 622
           H  N +D  + E+ ++ VPT     E LPP
Sbjct: 75  HNKNNSDSTSEEVPKIYVPTNPKGAERLPP 104


>08_01_0505 - 4379722-4380795,4380868-4381008,4381099-4381270,
            4381944-4382047,4382127-4382259,4384477-4384653,
            4385164-4385309,4385536-4385625,4385703-4385915,
            4386090-4386182,4386743-4386937,4387018-4387110,
            4387924-4388019,4388556-4388985,4389424-4390091,
            4392074-4392271,4392690-4393407,4394036-4394181
          Length = 1628

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 506  IGRRK*KGINYIVSSTHYYSRIHFYFFFFYCL 411
            +GR   +G+   VS  H YSR HF+F F   L
Sbjct: 1034 VGRTACRGVTVPVS--HIYSRNHFFFVFLSIL 1063


>04_04_1683 +
           35345506-35345581,35346171-35346343,35346706-35346739,
           35346919-35347055,35347356-35347422,35347645-35347744,
           35348375-35348538,35349023-35349069,35349177-35349224,
           35349463-35349976,35350190-35350278,35350472-35350549,
           35350972-35351019
          Length = 524

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 426 KKVEMYSTVVVSARNNIIYPLLFSSTYTL 512
           K VE+Y+  +  +RNN IY    ++ YTL
Sbjct: 174 KAVELYTCAIALSRNNAIYYCNRAAAYTL 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,623,258
Number of Sequences: 37544
Number of extensions: 477748
Number of successful extensions: 1153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)