Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1939
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    24   1.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   7.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.8  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   9.8  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 109 ISGNTLYVKAEVSGKSNPQNYNLRNH 186
           I G  L +    +GKSN   Y+L++H
Sbjct: 133 IEGKVLLLPVRGAGKSNITMYDLKSH 158


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 392 VNSSTHLSNKKKKSRNVFYCSSECSK 469
           + S  H  + K+KS+N  +C+ +  K
Sbjct: 49  LTSQPHQDHNKEKSKNNHHCNQDTEK 74


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 200 SWESARVGTTTPPISAVKRNA 262
           +WE  R  T  PPI    +NA
Sbjct: 630 NWEGLRARTLEPPIMPRVQNA 650


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +2

Query: 653  VGTTTLPISAAKQSFRFERWSSRCNYT*DLRTYIS 757
            V   TL     + S     WS RC +  +L +++S
Sbjct: 907  VWQVTLNARLVELSLGSNPWSCRCKFLQELSSWVS 941


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 311 LRSQYSYNGYPNLRTETHY 255
           L + Y+YN Y N     HY
Sbjct: 318 LSNNYNYNNYNNNYKPLHY 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,769
Number of Sequences: 438
Number of extensions: 5469
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)