Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1937
         (785 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    25   0.52 
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    22   4.8  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   6.4  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    22   6.4  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    22   6.4  
AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    21   8.4  
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    21   8.4  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   8.4  

>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -1

Query: 155 ANYQDDQSRNGKQEIEAKHEVLYTGHSTFEGHCYSIKYYRQIVLLRNK 12
           A++ D     GK   + K+ V+YT H   E       YY + + +R K
Sbjct: 141 ADFADAPDAIGKTRTKDKYRVVYTDHQRVE--LEKEFYYSRYITIRRK 186


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 230 SHHCRHYCFIVAFFGC 277
           +H C  +C + A F C
Sbjct: 7   AHLCAQFCLLAAIFTC 22


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -2

Query: 175 EFISALMPTIRMINPVMANRRLKQNMRYFTQDIPP 71
           E  SAL      +     NRR+KQ  R     IPP
Sbjct: 285 EIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPP 319


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -2

Query: 175 EFISALMPTIRMINPVMANRRLKQNMRYFTQDIPP 71
           E  SAL      +     NRR+KQ  R     IPP
Sbjct: 74  EIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPP 108


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -2

Query: 175 EFISALMPTIRMINPVMANRRLKQNMRYFTQDIPP 71
           E  SAL      +     NRR+KQ  R     IPP
Sbjct: 74  EIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPP 108


>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 308 IITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASIT 433
           + TF   LL   VA  A  + G +   DLE   + N N  +T
Sbjct: 244 VCTFYNILLCDSVAHTAGELLGAVYSLDLELKHIENFNDFVT 285


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 308 IITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASIT 433
           + TF   LL   VA  A  + G +   DLE   + N N  +T
Sbjct: 244 VCTFYNILLCDSVAHTAGELLGAVYSLDLELKHIENFNDFVT 285


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 308 IITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASIT 433
           + TF   LL   VA  A  + G +   DLE   + N N  +T
Sbjct: 564 VCTFYNILLCDSVAHTAGELLGAVYSLDLELKHIENFNDFVT 605


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,824
Number of Sequences: 336
Number of extensions: 3698
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)