Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1937
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces pom...    31   0.25 
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    31   0.25 
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    27   2.3  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    27   3.0  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.3  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   5.3  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.3  
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    25   9.3  
SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces pom...    25   9.3  

>SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -3

Query: 774 KLFHLAANGTS-EAACEYHTEELNQSDTDSNAGEHHTNVLHVNNQFSKTSLRVEVGRVLG 598
           ++  L  +G S +   +Y  E+L  SD DS+   HH N + + N+ ++    +   R + 
Sbjct: 60  EVLELIESGASIDFISQYCLEKLASSDNDSSVHNHHDNSV-LRNEDTQLQPHIVCNRTVR 118

Query: 597 AGR 589
           AGR
Sbjct: 119 AGR 121


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
 Frame = +1

Query: 367 RWLHEAYGLGRFGYAQP-----ERFHYSISGRQER 456
           R++HEA+G+  FG + P     E+FH++ SG  +R
Sbjct: 629 RYVHEAFGMHTFGDSGPAPKLYEKFHFTTSGVAQR 663


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 529 DRPSRPDVYTAALQVCLYDINSLLDVLVYRILSNGSVQVAH 407
           +RP+ P+     + +C  D NS+    VY  LS+GS+   H
Sbjct: 541 ERPTYPEYLKIPILIC-GDFNSVQGSGVYDFLSSGSISQNH 580


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 377 MKHTDLEDSVMRNLNASITQYPVDKN 454
           +K   +EDS + N+ AS+  + VDKN
Sbjct: 416 VKVETVEDSFLSNIGASLLSFTVDKN 441


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 389 DLEDSVMRNLNASITQYPVDKNVQK-TIDIIQTDLQCCGINVRPTGPIT 532
           D+E++V+       T  P+  N Q+ T D+ ++D   CG+    + P+T
Sbjct: 250 DVENAVVGTSPLEYTSKPLAANRQRSTADLTESD-NICGLTAGKSDPVT 297


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 430  NGSVQVAHNRIFQVRMLHVTSDAHSQFSHEYDQEE 326
            +GS+ + H++ FQ    H T  +  +   EY   E
Sbjct: 1111 SGSISLKHSKSFQSASTHSTKSSSVEIVREYSSRE 1145


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 644 SLVRHPFEWKLVEFSVQAA 588
           SLVRHP   K++ F +Q+A
Sbjct: 150 SLVRHPHRLKMLPFGIQSA 168


>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -1

Query: 218 ELVEVLIGEVHVRIRVYFSPDAN 150
           E++E   GE  + +R++F+P+A+
Sbjct: 81  EVIETGWGEFDIMVRIFFAPEAH 103


>SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/59 (25%), Positives = 24/59 (40%)
 Frame = +2

Query: 227 RSHHCRHYCFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDS 403
           +S H      +  F G     K  HC+I+ F    L + +    V +A    + DL+ S
Sbjct: 22  KSAHVACGALVAVFLGLYIGTKSIHCLILFFLAICLWLSLTWFLVELAHARVNNDLQMS 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,137,304
Number of Sequences: 5004
Number of extensions: 62591
Number of successful extensions: 207
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)