Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1937
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0828 + 32057670-32057851,32060054-32060132,32060808-320608... 30 2.4
06_02_0032 + 10775031-10775520,10775661-10776246,10776333-107769... 29 4.2
12_02_0386 + 18429675-18430679,18431001-18431111,18431139-184311... 29 5.5
01_06_0571 - 30333569-30334013,30334149-30334198,30334568-30334852 29 5.5
11_01_0671 - 5479240-5479286,5480399-5480588,5480669-5480824,548... 28 7.3
03_02_0229 + 6594931-6595030,6595573-6595826,6595935-6596061,659... 28 7.3
01_03_0086 - 12316010-12316162,12316626-12316712,12316810-123169... 28 7.3
09_04_0715 + 19697134-19697211,19697212-19697300,19697416-196974... 28 9.7
06_03_1162 + 28093749-28093851,28093939-28093997,28094691-280947... 28 9.7
06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248... 28 9.7
03_05_0938 - 28978696-28978809,28978942-28979028,28979124-289792... 28 9.7
03_02_0757 - 10940993-10941112,10941218-10941418,10941661-109417... 28 9.7
02_04_0277 - 21494616-21494747,21494830-21494916,21495025-214951... 28 9.7
01_06_1676 - 39084928-39085016,39085462-39085555,39085664-390857... 28 9.7
>02_05_0828 +
32057670-32057851,32060054-32060132,32060808-32060869,
32060993-32061092,32061169-32061210,32062057-32062098,
32062189-32062343,32063609-32063636
Length = 229
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -3
Query: 774 KLFHLAANGTSEAACEY--HTEELNQSDTDS-NAGEHHTNVLHVNNQFSKTSLRV 619
KL H A++ +E +Y H+ L +++ S + H+ H+N Q ++ SLR+
Sbjct: 53 KLSHFASSSMNEIIDKYNTHSNNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRL 107
>06_02_0032 +
10775031-10775520,10775661-10776246,10776333-10776973,
10777270-10777973
Length = 806
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +2
Query: 206 LLQVRSDRSHHCRHYCFIVAFFGCCGAVKENHCMIITFSVFLLII 340
L+Q + HH I+ FG GA C +T S++++ +
Sbjct: 455 LVQYKPILKHHILELAMIMDLFGLIGAYSAGSCRDVTTSIYVIAL 499
>12_02_0386 +
18429675-18430679,18431001-18431111,18431139-18431195,
18431552-18431589,18431688-18431733,18431811-18431849
Length = 431
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 245 HYCFIVAFFGCCGAVKENHCMIITFSV 325
HY +V +G G ++E HC + T V
Sbjct: 242 HYACVVDLYGRAGLIEEAHCFVKTMPV 268
>01_06_0571 - 30333569-30334013,30334149-30334198,30334568-30334852
Length = 259
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = -3
Query: 699 DTDSNAGEHHTNVLHVNNQFSKTSLRVEVGRVLGAGRDDAVIDLLGGAARARYGQTVIGP 520
D D + EH + H N Q + + + + +V AG A A +++GQT+ G
Sbjct: 157 DADEDDDEHRSVKQHGNRQKASSPIDIPARKVSSAGAKGA----RAPAGFSKFGQTLAGA 212
Query: 519 VGRTF 505
G +F
Sbjct: 213 GGGSF 217
>11_01_0671 -
5479240-5479286,5480399-5480588,5480669-5480824,
5481005-5481931
Length = 439
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 612 GRVLGAGRDDAVIDLLGGAARARYGQTVIGPVGRTF 505
G V AG D A LLGG + A+ + + GP R F
Sbjct: 277 GMVDNAGNDSAKCVLLGGLSEAKKLELIAGPEMRIF 312
>03_02_0229 +
6594931-6595030,6595573-6595826,6595935-6596061,
6596197-6596470,6596616-6596748,6596898-6596984,
6597067-6597186
Length = 364
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 373 LHEAYGLGRFGYAQPERFHYSISGRQERPED-Y*YHTNRLAMLRYKRPAD 519
LH LG FGY PE Y+++G+ + D Y + L +L ++P D
Sbjct: 237 LHSTRVLGTFGYHAPE---YAMTGQLNQKSDVYSFGVILLELLTGRKPVD 283
>01_03_0086 -
12316010-12316162,12316626-12316712,12316810-12316942,
12317057-12317330,12317588-12317714,12317815-12318071,
12319055-12319139
Length = 371
Score = 28.3 bits (60), Expect = 7.3
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 373 LHEAYGLGRFGYAQPERFHYSISGRQERPED-Y*YHTNRLAMLRYKRPADWADHGLP 540
LH LG FGY PE Y+++G+ D Y + L +L ++P DH LP
Sbjct: 233 LHSTRVLGTFGYHAPE---YAMTGQLSTKSDVYSFGVVLLELLTGRKP---VDHTLP 283
>09_04_0715 +
19697134-19697211,19697212-19697300,19697416-19697485,
19697756-19697816,19698223-19698461,19698578-19698704,
19698908-19699181,19699479-19699611,19700023-19700109,
19700231-19700365
Length = 430
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 373 LHEAYGLGRFGYAQPERFHYSISGRQERPED-Y*YHTNRLAMLRYKRPAD 519
LH LG FGY PE Y+++G+ + D Y + L +L ++P D
Sbjct: 298 LHSTRVLGTFGYHAPE---YAMTGQLTQKSDVYSFGVVLLELLTGRKPVD 344
>06_03_1162 +
28093749-28093851,28093939-28093997,28094691-28094766,
28094848-28094919,28095023-28095110,28095230-28095485,
28095583-28095698,28096064-28096127,28096252-28096354,
28096446-28096554,28097048-28097234
Length = 410
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 11 FYSVVIQFGGNI*LNNNGPRRWNVLCKVPHVLLQSPVCHYGIDH 142
F+S+ Q+ G + GP W+ L K P ++ +DH
Sbjct: 6 FWSIYYQYEGAVNEGQRGPTIWDTLTKRPGRVIDFSNADVAVDH 49
>06_03_1104 +
27623632-27623795,27624052-27624175,27624316-27624832,
27624943-27625073,27625161-27625567,27625690-27625963,
27626195-27626814,27627424-27627859
Length = 890
Score = 27.9 bits (59), Expect = 9.7
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -2
Query: 475 DINSLLDVLVYRILSNGSVQVAHNRIFQVRMLHVTSDAHSQFSHEYDQEEY*KRYYH 305
D N L D+ + +LSNG AH I VR + A S S +E+ + +YH
Sbjct: 614 DDNELADLEL--LLSNGESLKAHTAIISVRCPKLLPSAKSLGSDGKITDEWGRSFYH 668
>03_05_0938 -
28978696-28978809,28978942-28979028,28979124-28979256,
28979592-28979865,28980242-28980368,28980523-28980773,
28980854-28980935
Length = 355
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 373 LHEAYGLGRFGYAQPERFHYSISGRQERPED-Y*YHTNRLAMLRYKRPAD 519
LH LG FGY PE Y+++G+ + D Y + L +L ++P D
Sbjct: 230 LHSTKVLGTFGYHAPE---YAMTGQLTQKSDVYSFGVVLLELLTGRKPVD 276
>03_02_0757 -
10940993-10941112,10941218-10941418,10941661-10941795,
10941948-10942088,10942214-10942405,10942624-10942748,
10942828-10942903,10943024-10943173,10943467-10943856,
10944078-10944227,10944430-10944710,10945034-10945230,
10945836-10946035,10946422-10946469,10946566-10946688,
10946771-10946882,10946988-10947103,10947526-10947660
Length = 963
Score = 27.9 bits (59), Expect = 9.7
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -3
Query: 768 FHLAANGTSEAACEYHTEELNQSDTDSNAGEHHTNVLHVNNQFSKTSLRVEVGRVLGAGR 589
FH+ A S+ + + E S D G H + + + + SKT++ V RVLG G+
Sbjct: 798 FHVQA--FSDESLSFDEECSRTSSVDG--GLHESPITNTGSSISKTTMPQSVPRVLGVGQ 853
>02_04_0277 -
21494616-21494747,21494830-21494916,21495025-21495157,
21495267-21495540,21495829-21495955,21496048-21496311
Length = 338
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 373 LHEAYGLGRFGYAQPERFHYSISGRQERPED-Y*YHTNRLAMLRYKRPAD 519
LH LG FGY PE Y+++G+ + D Y + L +L ++P D
Sbjct: 207 LHSTRVLGTFGYHAPE---YAMTGQINQKSDVYSFGVILLELLTGRKPVD 253
>01_06_1676 -
39084928-39085016,39085462-39085555,39085664-39085750,
39085941-39086073,39086451-39086724,39086863-39086989,
39087095-39087345,39087476-39087575
Length = 384
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 373 LHEAYGLGRFGYAQPERFHYSISGRQERPED-Y*YHTNRLAMLRYKRPAD 519
LH LG FGY PE Y+++G+ + D Y + L +L ++P D
Sbjct: 236 LHSTRVLGTFGYHAPE---YAMTGQLTQKSDVYSFGVVLLELLTGRKPVD 282
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,907,850
Number of Sequences: 37544
Number of extensions: 438639
Number of successful extensions: 1237
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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