Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1936
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    28   1.7  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    27   3.0  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    27   3.0  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    27   4.0  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   9.3  

>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +1

Query: 481 DHLIIIIFYKPSLYTL-FNGAHLILWQNGIFLCLV*LLYLIMNE*PDCKSYRILVINVFP 657
           D ++++   KP L  + F G+HL +WQ  I L ++ +  L++    D   + ILV  VF 
Sbjct: 681 DPILVLSTMKPYLCNITFLGSHLCIWQPKILLGIMYVTDLVLFF-LDTYLWYILVNTVFS 739

Query: 658 V 660
           V
Sbjct: 740 V 740


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 481 DHLIIIIFYKPSLYTLFNGAHLILWQNGI 567
           D+L +I F  P+   L +G H  +W+ G+
Sbjct: 145 DYLFLINFTIPAHNDLTHGVHYCIWETGV 173


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = -2

Query: 386 NCSIEECKYESISLHTYIYKSASVVRSL*TYTKG-QRLSDSRFYSTPILLLNTYC 225
           N  I E  Y  I + T +     V   L  Y  G    S   FY +P+LL+  YC
Sbjct: 25  NTWIAEFLYRRIEVSTPVSGFLRVREGLYLYENGLDPYSGGVFYQSPLLLILNYC 79


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 481 DHLIIIIFYKPSLYTLFNGAHLILWQNG 564
           D ++I +  KPS+YT  +  H I W NG
Sbjct: 272 DAVVIPVTIKPSIYTEPSLPHHIDWNNG 299


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +1

Query: 28  SLVTLINSQLTRV*LDAELRAHRWSACKPTKLNNVFIRFLSTQVRVSVKVRVFDS 192
           S +  +NS  +    DA L  H +    PT L+N  + + S     + ++ V  S
Sbjct: 363 STIRSVNSPFSEDHADASLTTHVFDPISPTALSNSVLNYDSNNFSGTPQINVVPS 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,033
Number of Sequences: 5004
Number of extensions: 60058
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)