Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1936
         (783 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73969-8|CAA98239.1|  351|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U53337-5|AAP40522.1|  377|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U53337-4|AAA96186.2|  636|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AL132877-8|CAD91705.1|  339|Caenorhabditis elegans Hypothetical ...    28   8.7  
AL132877-7|CAC70108.1|  686|Caenorhabditis elegans Hypothetical ...    28   8.7  

>Z73969-8|CAA98239.1|  351|Caenorhabditis elegans Hypothetical
           protein C12D8.12 protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 492 YYYFLQTIVVHFVQR-RAFNFMAEWYFF 572
           Y++F   I VHFV R +A  + ++W +F
Sbjct: 95  YFFFASLISVHFVYRYKALKYGSKWIYF 122


>U53337-5|AAP40522.1|  377|Caenorhabditis elegans Hypothetical
           protein R02E12.2b protein.
          Length = 377

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 448 CSQTLRYTITSDHLIIIIFYKPSLYTLF 531
           C   LR +I  DHL  II Y    YT F
Sbjct: 156 CGLMLRESIRHDHLAKIILYSDVFYTFF 183


>U53337-4|AAA96186.2|  636|Caenorhabditis elegans Hypothetical
           protein R02E12.2a protein.
          Length = 636

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 448 CSQTLRYTITSDHLIIIIFYKPSLYTLF 531
           C   LR +I  DHL  II Y    YT F
Sbjct: 415 CGLMLRESIRHDHLAKIILYSDVFYTFF 442


>AL132877-8|CAD91705.1|  339|Caenorhabditis elegans Hypothetical
           protein Y105E8B.2b protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +2

Query: 338 MCVNLSIRIYILQSNNSVNNTLE*ELLKLFHSLAVLNVRKHYVTQLQA-TISLLLFFTNH 514
           M + LS R+ I   N +    +E   L L +S+A +NV+        A  +  LL F   
Sbjct: 167 MLILLSHRLIIGNINAAGKYVME-STLSL-NSVAPVNVKDRESGAANAGKVLKLLIFPES 224

Query: 515 RCTLCSTARI 544
           RC LC +ARI
Sbjct: 225 RCYLCESARI 234


>AL132877-7|CAC70108.1|  686|Caenorhabditis elegans Hypothetical
           protein Y105E8B.2a protein.
          Length = 686

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +2

Query: 338 MCVNLSIRIYILQSNNSVNNTLE*ELLKLFHSLAVLNVRKHYVTQLQA-TISLLLFFTNH 514
           M + LS R+ I   N +    +E   L L +S+A +NV+        A  +  LL F   
Sbjct: 167 MLILLSHRLIIGNINAAGKYVME-STLSL-NSVAPVNVKDRESGAANAGKVLKLLIFPES 224

Query: 515 RCTLCSTARI 544
           RC LC +ARI
Sbjct: 225 RCYLCESARI 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,644,026
Number of Sequences: 27780
Number of extensions: 332257
Number of successful extensions: 691
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)