Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1935
         (789 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    27   0.17 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.52 
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    25   0.52 
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    25   0.91 
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    23   2.1  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    23   2.1  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    23   3.7  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    22   6.4  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   8.5  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   8.5  

>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = +3

Query: 66  VARALGAPARLYYKADDKMRIHXXXXXXXXXXXSDYLFNYFTLGLDVLFDART 224
           +A ++G    +Y K+  +  IH           S Y FNY+ + +   +  RT
Sbjct: 41  LALSIGVVVSIYSKSFHRNEIHIKIVLMFFKEASLYCFNYYVIVVTTFYKRRT 93


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +2

Query: 197  PGRVVRRSHQPGEEVRPAHDYPGHYNFNMYHRC 295
            P  V+    +P +   P    P  +N N Y+RC
Sbjct: 1089 PAVVMPEVDKPSQPCEPGQYVPDPHNCNAYYRC 1121


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 436 EHDGALAHPQR-ARHHLP-LAVGGHRNPAPALHKR 338
           +H  ALA  +R A   +P LA GG R P PA  +R
Sbjct: 305 DHRPALAQQRRVAAVQVPQLAGGGRRGPGPARSRR 339


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 499 GYHFEVMSNNYIASITLYQPDNARPHYAVGSIA*HGARPER 621
           GYH  + SN+ + +  L  P N  P    GS    G R +R
Sbjct: 40  GYHSPLESNHKLVTFILKNPPNLNP-AVQGSSLTEGKRSKR 79


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 529 YIASITLYQPDNAR 570
           Y AS T+Y+PDN +
Sbjct: 27  YFASWTIYRPDNGK 40


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 529 YIASITLYQPDNAR 570
           Y AS T+Y+PDN +
Sbjct: 27  YFASWTIYRPDNGK 40


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 457 HHQPVRLHVLLWIPGYHFEVMSNNYIASITLY 552
           H+    LH+LLWI      ++ ++YI     +
Sbjct: 247 HNSLYSLHLLLWITVTFILLVGDSYIVMYVFF 278


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 529 YIASITLYQPDNAR 570
           Y  S T+Y+PDN +
Sbjct: 26  YFTSWTIYRPDNGK 39


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 372 VTATPPPLSTSE 337
           VT TPPPL  S+
Sbjct: 57  VTGTPPPLDCSK 68


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 529 YIASITLYQPDNARPH 576
           Y+AS  +Y+PD    H
Sbjct: 29  YVASWAIYRPDKGEYH 44


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,644
Number of Sequences: 336
Number of extensions: 2871
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)