Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1935
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    31   0.25 
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    28   1.8  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    27   2.3  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    25   9.4  

>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 236 EVRPAHDYPGHYNFNMYHRCEFELTVQPD 322
           +V+P H++   YN +MY R  F   V PD
Sbjct: 183 QVKPKHEHNVDYNSSMYRRRTFRFWVHPD 211


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +2

Query: 443 ASSTNTTNPFGSTFCYG 493
           ASSTNTT+ FGST  +G
Sbjct: 230 ASSTNTTSAFGSTPAFG 246


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 425 PVVLNRASSTNTTNPFGSTFCYGYQDII 508
           P +  R  S++  NPFGSTF   + D I
Sbjct: 170 PAMHKRTPSSDPNNPFGSTFANKFLDHI 197


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 75  ALGAPARLYYKADDKMRIH 131
           AL AP +LY   D K R+H
Sbjct: 227 ALSAPGQLYTVTDSKARVH 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,419
Number of Sequences: 5004
Number of extensions: 45444
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)