Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1935
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1382 - 29758759-29758806,29758888-29758943,29759901-297600...    61   9e-10
05_01_0115 + 804674-804766,805729-806442                               30   1.8  
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395...    29   4.2  
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228...    29   5.6  
02_01_0129 - 934865-935152,935241-935490,935965-936105,937175-93...    28   7.4  

>06_03_1382 -
           29758759-29758806,29758888-29758943,29759901-29760000,
           29760107-29760220,29760807-29760854,29760959-29761021,
           29761237-29761439,29761518-29761578,29761685-29761790,
           29761920-29761987,29762344-29762418,29762507-29762589,
           29762788-29762953
          Length = 396

 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
 Frame = +3

Query: 39  VRFGDSCQGVARALGAPARLYYKADDKMRIHXXXXXXXXXXX-SDYLFNYFTLGLDVLFD 215
           + FG S Q V   LG P  ++ K  D+M IH             DY +NYF+ G+D+LFD
Sbjct: 268 IPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRPRTTLCGDYFYNYFSRGIDILFD 327

Query: 216 ARTNQVKKFVLH 251
            +T+++KKFVLH
Sbjct: 328 GQTHRIKKFVLH 339



 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 254 DYPGHYNFNMYHRCEFELTVQPDKSEAHSLVESGGGVAVTAYSKWE 391
           ++PGH +FN Y +C F   V  D   A +L+     V    YSKW+
Sbjct: 341 NFPGHSDFNSYMKCNF---VIYDAEAASALM-----VRQCCYSKWD 378


>05_01_0115 + 804674-804766,805729-806442
          Length = 268

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/35 (48%), Positives = 17/35 (48%)
 Frame = -1

Query: 405 ARDTTSHLL*AVTATPPPLSTSECASDLSGWTVSS 301
           ARD    LL A  A PPPL TS       G  VSS
Sbjct: 78  ARDQLQRLLAAAAAKPPPLVTSSVTDSDGGSLVSS 112


>10_01_0359 +
           3956527-3956616,3957623-3957818,3958102-3959418,
           3959482-3960445,3960588-3960648,3961500-3961946
          Length = 1024

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
 Frame = -3

Query: 436 EHDGALAHPQRARHHLPLAVGGHRNPAPALHKRVRLGFIRLDGELELAAMVHIEVVMARV 257
           E+D AL+     R HL + VGG +  A +    V  G I+  GE E++++ +   V+++ 
Sbjct: 185 END-ALSRSLEEREHLMMKVGGEKEQAES-QIEVLKGTIQ-SGEKEISSLKYELHVLSKE 241

Query: 256 VVCRTNFFTWLVRASNNTSRPSVK*LKR*S--EAGGGRLRAVGR 131
              R       VR+++  ++  V+ +K+ S  EA   RLR + R
Sbjct: 242 FEIRNEEKNMSVRSADVATKQHVEDVKKISKLEAECQRLRGLVR 285


>03_06_0123 -
           31821915-31822094,31822187-31822324,31822413-31822817,
           31822897-31823212,31823305-31823543,31823800-31823903,
           31823987-31824145,31824326-31824510,31825318-31825427,
           31826900-31826947,31827047-31827241,31827354-31827422,
           31829521-31829620,31829879-31829940
          Length = 769

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 350 SGGGVAVTAYSKWE 391
           +GGG+A TAY KWE
Sbjct: 256 AGGGIASTAYKKWE 269


>02_01_0129 -
           934865-935152,935241-935490,935965-936105,937175-937707
          Length = 403

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -1

Query: 360 PPPLSTSECASDLSGWTVSSNSQRWYILKL*WPG*SCAG 244
           PPPL TS C    + W    NS R  +  L W    C G
Sbjct: 62  PPPLYTSSCPFHRNAWNCPRNS-RPPVAALSWAPARCGG 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,999,815
Number of Sequences: 37544
Number of extensions: 364084
Number of successful extensions: 1101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)