Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1935
         (789 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC004556-1|AAH04556.1|  422|Homo sapiens chromosome 16 open read...    95   3e-19
AF176088-1|AAK96888.1|  422|Homo sapiens lin-10-like protein pro...    95   3e-19

>BC004556-1|AAH04556.1|  422|Homo sapiens chromosome 16 open reading
           frame 70 protein.
          Length = 422

 Score = 94.7 bits (225), Expect = 3e-19
 Identities = 44/88 (50%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
 Frame = +2

Query: 254 DYPGHYNFNMYHRCEFELTVQPDKSEAHSLVESGGGVAVTAYSKWEVVSRAL-RVCERPV 430
           +YPGHYNFN+YHRCEF++ +   K  A    E+      T YSKW+ +   L    E+PV
Sbjct: 312 NYPGHYNFNIYHRCEFKIPLAIKKENADGQTET-----CTTYSKWDNIQELLGHPVEKPV 366

Query: 431 VLNRASSTNTTNPFGSTFCYGYQDIILK 514
           VL+R+SS N TNPFGSTFC+G Q +I +
Sbjct: 367 VLHRSSSPNNTNPFGSTFCFGLQRMIFE 394



 Score = 89.8 bits (213), Expect = 1e-17
 Identities = 41/74 (55%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
 Frame = +3

Query: 33  RVVRFGDSCQGVARALGAPARLYYKADDKMRIHXXXXXXXXXXX-SDYLFNYFTLGLDVL 209
           R V FGDSCQ V   LG+P +++YK++DKM+IH            +DY FNYFTLG+D+L
Sbjct: 237 RSVYFGDSCQDVLSMLGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYFTLGVDIL 296

Query: 210 FDARTNQVKKFVLH 251
           FDA T++VKKFVLH
Sbjct: 297 FDANTHKVKKFVLH 310



 Score = 33.5 bits (73), Expect = 0.89
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +1

Query: 508 FEVMSNNYIASITLYQPDNARPH 576
           FEVM NN+IAS+TLY P     H
Sbjct: 393 FEVMQNNHIASVTLYGPPRPGSH 415


>AF176088-1|AAK96888.1|  422|Homo sapiens lin-10-like protein
           protein.
          Length = 422

 Score = 94.7 bits (225), Expect = 3e-19
 Identities = 44/88 (50%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
 Frame = +2

Query: 254 DYPGHYNFNMYHRCEFELTVQPDKSEAHSLVESGGGVAVTAYSKWEVVSRAL-RVCERPV 430
           +YPGHYNFN+YHRCEF++ +   K  A    E+      T YSKW+ +   L    E+PV
Sbjct: 312 NYPGHYNFNIYHRCEFKIPLAIKKENADGQTET-----CTTYSKWDNIQELLGHPVEKPV 366

Query: 431 VLNRASSTNTTNPFGSTFCYGYQDIILK 514
           VL+R+SS N TNPFGSTFC+G Q +I +
Sbjct: 367 VLHRSSSPNNTNPFGSTFCFGLQRMIFE 394



 Score = 89.8 bits (213), Expect = 1e-17
 Identities = 41/74 (55%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
 Frame = +3

Query: 33  RVVRFGDSCQGVARALGAPARLYYKADDKMRIHXXXXXXXXXXX-SDYLFNYFTLGLDVL 209
           R V FGDSCQ V   LG+P +++YK++DKM+IH            +DY FNYFTLG+D+L
Sbjct: 237 RSVYFGDSCQDVLSMLGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYFTLGVDIL 296

Query: 210 FDARTNQVKKFVLH 251
           FDA T++VKKFVLH
Sbjct: 297 FDANTHKVKKFVLH 310



 Score = 33.5 bits (73), Expect = 0.89
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +1

Query: 508 FEVMSNNYIASITLYQPDNARPH 576
           FEVM NN+IAS+TLY P     H
Sbjct: 393 FEVMQNNHIASVTLYGPPRPGSH 415


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,612,521
Number of Sequences: 237096
Number of extensions: 1984266
Number of successful extensions: 4602
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4598
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)