Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1935
         (789 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75713-3|CAB54301.1|  419|Caenorhabditis elegans Hypothetical pr...    77   1e-14
Z75713-2|CAB00051.2|  422|Caenorhabditis elegans Hypothetical pr...    77   1e-14
X51321-1|CAA35704.1|  422|Caenorhabditis elegans hypothetical pr...    77   1e-14
Z81065-3|CAH04732.1|  358|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U00068-1|AAA50745.1|   85|Caenorhabditis elegans Hypothetical pr...    28   8.8  
AL110471-3|CAB63308.1|  818|Caenorhabditis elegans Hypothetical ...    28   8.8  
AL034364-6|CAA22254.2|  818|Caenorhabditis elegans Hypothetical ...    28   8.8  

>Z75713-3|CAB54301.1|  419|Caenorhabditis elegans Hypothetical
           protein T01G9.2b protein.
          Length = 419

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 34/73 (46%), Positives = 46/73 (63%)
 Frame = +3

Query: 33  RVVRFGDSCQGVARALGAPARLYYKADDKMRIHXXXXXXXXXXXSDYLFNYFTLGLDVLF 212
           R + FGDS   V   LGAP +++YK+DDKM+IH            ++ FNYF +GLD+LF
Sbjct: 253 RQIYFGDSVSDVQSILGAPTKVFYKSDDKMKIHRGLHKETLYGPPNFFFNYFVMGLDILF 312

Query: 213 DARTNQVKKFVLH 251
           D  + +V KFVLH
Sbjct: 313 DFVSKRVVKFVLH 325



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
 Frame = +2

Query: 260 PGHYNFNMYHRCEFELTVQPDKSEAHSLVESGGGVAVTAYSKWEVVSRALRVCE---RPV 430
           PGH +F MY RC F + +   + E            +   SK++  S A        RPV
Sbjct: 329 PGHCDFGMYSRCNFSIFLNDKQYE------------IRTDSKFDEFSHAFMNDSNPPRPV 376

Query: 431 VLNRASSTNTTNPFGSTFCYGYQDIILK 514
           VL R        PFGSTFCYG + II++
Sbjct: 377 VLARQEQ----QPFGSTFCYGIKQIIVE 400


>Z75713-2|CAB00051.2|  422|Caenorhabditis elegans Hypothetical
           protein T01G9.2a protein.
          Length = 422

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 34/73 (46%), Positives = 46/73 (63%)
 Frame = +3

Query: 33  RVVRFGDSCQGVARALGAPARLYYKADDKMRIHXXXXXXXXXXXSDYLFNYFTLGLDVLF 212
           R + FGDS   V   LGAP +++YK+DDKM+IH            ++ FNYF +GLD+LF
Sbjct: 256 RQIYFGDSVSDVQSILGAPTKVFYKSDDKMKIHRGLHKETLYGPPNFFFNYFVMGLDILF 315

Query: 213 DARTNQVKKFVLH 251
           D  + +V KFVLH
Sbjct: 316 DFVSKRVVKFVLH 328



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
 Frame = +2

Query: 260 PGHYNFNMYHRCEFELTVQPDKSEAHSLVESGGGVAVTAYSKWEVVSRALRVCE---RPV 430
           PGH +F MY RC F + +   + E            +   SK++  S A        RPV
Sbjct: 332 PGHCDFGMYSRCNFSIFLNDKQYE------------IRTDSKFDEFSHAFMNDSNPPRPV 379

Query: 431 VLNRASSTNTTNPFGSTFCYGYQDIILK 514
           VL R        PFGSTFCYG + II++
Sbjct: 380 VLARQEQ----QPFGSTFCYGIKQIIVE 403


>X51321-1|CAA35704.1|  422|Caenorhabditis elegans hypothetical
           protein protein.
          Length = 422

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 34/73 (46%), Positives = 46/73 (63%)
 Frame = +3

Query: 33  RVVRFGDSCQGVARALGAPARLYYKADDKMRIHXXXXXXXXXXXSDYLFNYFTLGLDVLF 212
           R + FGDS   V   LGAP +++YK+DDKM+IH            ++ FNYF +GLD+LF
Sbjct: 256 RQIYFGDSVSDVQSILGAPTKVFYKSDDKMKIHRGLHKETLYGPPNFFFNYFVMGLDILF 315

Query: 213 DARTNQVKKFVLH 251
           D  + +V KFVLH
Sbjct: 316 DFVSKRVVKFVLH 328



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
 Frame = +2

Query: 260 PGHYNFNMYHRCEFELTVQPDKSEAHSLVESGGGVAVTAYSKWEVVSRALRVCE---RPV 430
           PGH +F MY RC F + +   + E            +   SK++  S A        RPV
Sbjct: 332 PGHCDFGMYSRCNFSIFLNDKQYE------------IRTDSKFDEFSHAFMNDSNPPRPV 379

Query: 431 VLNRASSTNTTNPFGSTFCYGYQDIILK 514
           VL R        PFGSTFCYG + II++
Sbjct: 380 VLARQEQ----QPFGSTFCYGIKQIIVE 403


>Z81065-3|CAH04732.1|  358|Caenorhabditis elegans Hypothetical
           protein F16C3.3 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = -1

Query: 474 PNGLVVLVEEARLSTTGRSHTRSARDTTSHLL*AVTATPPPLSTSECASDLSGWTVSSN 298
           P  +VV  E+A+ S      T S R  + H+  + TATPPP S +   +  SG     N
Sbjct: 155 PVKVVVNFEQAQGSDVYGGATSSIRRHSRHVAMSQTATPPPSSRTVYPNVDSGVQTDDN 213


>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
            F32H2.5 protein.
          Length = 2586

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/40 (32%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +1

Query: 463  QPVRLHVLLWIPGYHFEVMSNNYI-ASITLYQPDNARPHY 579
            +P++L V+L     +FE++S++ + AS  +Y P++ +P Y
Sbjct: 948  KPIKLDVVLSPGNGYFEIISDDQVAASGRIYIPEDNQPFY 987


>U00068-1|AAA50745.1|   85|Caenorhabditis elegans Hypothetical
           protein W04D12.1 protein.
          Length = 85

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 296 EFELTVQPDKSEAHSLVESGGGVAVTAYSKWEVVSRALRVCER 424
           E E+  +  K E H L+E  G    +   KW+ +  A++V ++
Sbjct: 16  EREIEKERSKDEFHGLIEIDGECMQSGNRKWKRIDSAVKVAKK 58


>AL110471-3|CAB63308.1|  818|Caenorhabditis elegans Hypothetical
           protein W06D4.6 protein.
          Length = 818

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 372 VTATPPPLSTSECASDLSGWTVSSNSQR 289
           V +  PP + ++CASDLS W  S  S R
Sbjct: 739 VESVDPP-TNADCASDLSNWFHSQKSAR 765


>AL034364-6|CAA22254.2|  818|Caenorhabditis elegans Hypothetical
           protein W06D4.6 protein.
          Length = 818

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 372 VTATPPPLSTSECASDLSGWTVSSNSQR 289
           V +  PP + ++CASDLS W  S  S R
Sbjct: 739 VESVDPP-TNADCASDLSNWFHSQKSAR 765


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,975,428
Number of Sequences: 27780
Number of extensions: 277100
Number of successful extensions: 873
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)